miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 5' -58.7 NC_005887.1 + 1757 0.68 0.352323
Target:  5'- cGcgCAGCuuGC--GCUCGUGCucgGGGCg -3'
miRNA:   3'- uCuaGUCGggCGuaUGGGCACG---CCCG- -5'
28112 5' -58.7 NC_005887.1 + 2324 0.68 0.32777
Target:  5'- gAGGUC-GCUgGCAUcuauggcgAUCCG-GCGGGCg -3'
miRNA:   3'- -UCUAGuCGGgCGUA--------UGGGCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 4146 0.71 0.21834
Target:  5'- cGAUCugcGCCUGCuUGCCCGUGagcaGcGGCu -3'
miRNA:   3'- uCUAGu--CGGGCGuAUGGGCACg---C-CCG- -5'
28112 5' -58.7 NC_005887.1 + 5071 1.11 0.000235
Target:  5'- aAGAUCAGCCCGCAUACCCGUGCGGGCu -3'
miRNA:   3'- -UCUAGUCGGGCGUAUGGGCACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 5081 0.67 0.405222
Target:  5'- --uUCGGUCUGC--GCCuCG-GCGGGCg -3'
miRNA:   3'- ucuAGUCGGGCGuaUGG-GCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 5149 0.68 0.335811
Target:  5'- uAGAUCgacAGCCCGCAcgGgUa-UGCGGGCu -3'
miRNA:   3'- -UCUAG---UCGGGCGUa-UgGgcACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 7279 0.69 0.297039
Target:  5'- -cAUCGGCCC-CGgccGCCCGcUGUGGGUc -3'
miRNA:   3'- ucUAGUCGGGcGUa--UGGGC-ACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 8186 0.66 0.466848
Target:  5'- cAGGUCGGgcaguucgaugucuaCCCGCGcACCgacaCGcGCGGGCu -3'
miRNA:   3'- -UCUAGUC---------------GGGCGUaUGG----GCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 8279 0.66 0.452944
Target:  5'- uGAaCAGCCCGCgcGUGUCgGUgcGCGGGUa -3'
miRNA:   3'- uCUaGUCGGGCG--UAUGGgCA--CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 10072 0.66 0.452944
Target:  5'- ---cCAGCaggagCCGCAUuCCguCGUGUGGGCg -3'
miRNA:   3'- ucuaGUCG-----GGCGUAuGG--GCACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 10331 0.67 0.414513
Target:  5'- cGGUCuGCCCGUugACCUGgcgGCGGa- -3'
miRNA:   3'- uCUAGuCGGGCGuaUGGGCa--CGCCcg -5'
28112 5' -58.7 NC_005887.1 + 12293 0.66 0.469855
Target:  5'- uGAUCAGguuuggcgugaaauCCgGCGcGCCCG-GCGcGGCg -3'
miRNA:   3'- uCUAGUC--------------GGgCGUaUGGGCaCGC-CCG- -5'
28112 5' -58.7 NC_005887.1 + 13584 0.82 0.033762
Target:  5'- cGAUCguGGCgCGCAUGCCCGUGCcGGCg -3'
miRNA:   3'- uCUAG--UCGgGCGUAUGGGCACGcCCG- -5'
28112 5' -58.7 NC_005887.1 + 14761 0.68 0.341526
Target:  5'- ---cCGGCCCGCccGCCgcgacgagcccgauCGUGCGGGg -3'
miRNA:   3'- ucuaGUCGGGCGuaUGG--------------GCACGCCCg -5'
28112 5' -58.7 NC_005887.1 + 14792 0.67 0.405222
Target:  5'- cAGAUCAaCCCGCuggACCCGaucaaucugGCGGccGCg -3'
miRNA:   3'- -UCUAGUcGGGCGua-UGGGCa--------CGCC--CG- -5'
28112 5' -58.7 NC_005887.1 + 15445 0.69 0.304506
Target:  5'- cGAUCAGCgCgGCGUcgACCUGcuCGGGCg -3'
miRNA:   3'- uCUAGUCG-GgCGUA--UGGGCacGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 15906 0.66 0.472874
Target:  5'- cGcgCAGCUgGCcgACCUGcguuccgcGCGGGCc -3'
miRNA:   3'- uCuaGUCGGgCGuaUGGGCa-------CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 16322 0.69 0.282531
Target:  5'- -cAUCAGCUCgGCgacgGUGCCCGUGCGcucgccggccGGCg -3'
miRNA:   3'- ucUAGUCGGG-CG----UAUGGGCACGC----------CCG- -5'
28112 5' -58.7 NC_005887.1 + 16440 0.66 0.443153
Target:  5'- gGGAUCGagaaCCGCGUGCgC--GCGGGCa -3'
miRNA:   3'- -UCUAGUcg--GGCGUAUGgGcaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 16520 0.66 0.462853
Target:  5'- cGAUCGcGUcgCCGCcgGCgCCGaGUGGGCg -3'
miRNA:   3'- uCUAGU-CG--GGCGuaUG-GGCaCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.