Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 5071 | 1.11 | 0.000235 |
Target: 5'- aAGAUCAGCCCGCAUACCCGUGCGGGCu -3' miRNA: 3'- -UCUAGUCGGGCGUAUGGGCACGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 41943 | 0.66 | 0.472874 |
Target: 5'- uGAgCuGCCCgGCGUGCUcgcguggugCGUGCGcGGCg -3' miRNA: 3'- uCUaGuCGGG-CGUAUGG---------GCACGC-CCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 15906 | 0.66 | 0.472874 |
Target: 5'- cGcgCAGCUgGCcgACCUGcguuccgcGCGGGCc -3' miRNA: 3'- uCuaGUCGGgCGuaUGGGCa-------CGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 8186 | 0.66 | 0.466848 |
Target: 5'- cAGGUCGGgcaguucgaugucuaCCCGCGcACCgacaCGcGCGGGCu -3' miRNA: 3'- -UCUAGUC---------------GGGCGUaUGG----GCaCGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 16520 | 0.66 | 0.462853 |
Target: 5'- cGAUCGcGUcgCCGCcgGCgCCGaGUGGGCg -3' miRNA: 3'- uCUAGU-CG--GGCGuaUG-GGCaCGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 29731 | 0.66 | 0.452944 |
Target: 5'- aGGAUCAcGCgCCGCGcgugcacggucuUGCCCG-GCGaGCu -3' miRNA: 3'- -UCUAGU-CG-GGCGU------------AUGGGCaCGCcCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 10072 | 0.66 | 0.452944 |
Target: 5'- ---cCAGCaggagCCGCAUuCCguCGUGUGGGCg -3' miRNA: 3'- ucuaGUCG-----GGCGUAuGG--GCACGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 24922 | 0.66 | 0.450976 |
Target: 5'- cGGAUCGGCaCCGUugucgaucgcgACgCGUgcgcGCGGGCc -3' miRNA: 3'- -UCUAGUCG-GGCGua---------UGgGCA----CGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 16440 | 0.66 | 0.443153 |
Target: 5'- gGGAUCGagaaCCGCGUGCgC--GCGGGCa -3' miRNA: 3'- -UCUAGUcg--GGCGUAUGgGcaCGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 29492 | 0.66 | 0.443153 |
Target: 5'- cGAUgucgUAGCCgGCGgcCUCGacgGCGGGCg -3' miRNA: 3'- uCUA----GUCGGgCGUauGGGCa--CGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 37410 | 0.66 | 0.423934 |
Target: 5'- cGGUCGcgacuGCCUGCAcGCCagGUGCGGaGUg -3' miRNA: 3'- uCUAGU-----CGGGCGUaUGGg-CACGCC-CG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 7279 | 0.69 | 0.297039 |
Target: 5'- -cAUCGGCCC-CGgccGCCCGcUGUGGGUc -3' miRNA: 3'- ucUAGUCGGGcGUa--UGGGC-ACGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 2324 | 0.68 | 0.32777 |
Target: 5'- gAGGUC-GCUgGCAUcuauggcgAUCCG-GCGGGCg -3' miRNA: 3'- -UCUAGuCGGgCGUA--------UGGGCaCGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 30760 | 0.68 | 0.32777 |
Target: 5'- cGGUCAGCUCGa----CCGUGCGcgcGGCg -3' miRNA: 3'- uCUAGUCGGGCguaugGGCACGC---CCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 26073 | 0.68 | 0.32777 |
Target: 5'- uGGUCAGCgCGuCAgcgGCCCGcGCGGcGUu -3' miRNA: 3'- uCUAGUCGgGC-GUa--UGGGCaCGCC-CG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 39623 | 0.67 | 0.372886 |
Target: 5'- -aAUCAGgcacauacgggaauaCCCGUGUcGCCUGUGUGGGUa -3' miRNA: 3'- ucUAGUC---------------GGGCGUA-UGGGCACGCCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 33744 | 0.67 | 0.390633 |
Target: 5'- aGGAUCAGCgCGCcgGCCUucacgagcaucugGCGcGGCg -3' miRNA: 3'- -UCUAGUCGgGCGuaUGGGca-----------CGC-CCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 14792 | 0.67 | 0.405222 |
Target: 5'- cAGAUCAaCCCGCuggACCCGaucaaucugGCGGccGCg -3' miRNA: 3'- -UCUAGUcGGGCGua-UGGGCa--------CGCC--CG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 13584 | 0.82 | 0.033762 |
Target: 5'- cGAUCguGGCgCGCAUGCCCGUGCcGGCg -3' miRNA: 3'- uCUAG--UCGgGCGUAUGGGCACGcCCG- -5' |
|||||||
28112 | 5' | -58.7 | NC_005887.1 | + | 12293 | 0.66 | 0.469855 |
Target: 5'- uGAUCAGguuuggcgugaaauCCgGCGcGCCCG-GCGcGGCg -3' miRNA: 3'- uCUAGUC--------------GGgCGUaUGGGCaCGC-CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home