miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28114 5' -61.4 NC_005887.1 + 41359 0.69 0.183689
Target:  5'- cUUGCCCGgcggcAGCAGCGCGCccguGCGcAGGUc -3'
miRNA:   3'- -AGCGGGC-----UCGUCGCGCGc---CGC-UUCAa -5'
28114 5' -61.4 NC_005887.1 + 24953 0.69 0.193733
Target:  5'- gCGCgCGGGCcgccuuGCGCGCGGCcgcGAGGg- -3'
miRNA:   3'- aGCGgGCUCGu-----CGCGCGCCG---CUUCaa -5'
28114 5' -61.4 NC_005887.1 + 30765 0.69 0.193733
Target:  5'- -aGCUCGAcCGuGCGCGCGGCG-AGUUc -3'
miRNA:   3'- agCGGGCUcGU-CGCGCGCCGCuUCAA- -5'
28114 5' -61.4 NC_005887.1 + 13609 0.69 0.193733
Target:  5'- aUCGCugCUGGcagcGCGGCGCGCGGCGGc--- -3'
miRNA:   3'- -AGCG--GGCU----CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 35393 0.69 0.198933
Target:  5'- cCGgCCGccGCGGCGCGCGGCaguGGAGc- -3'
miRNA:   3'- aGCgGGCu-CGUCGCGCGCCG---CUUCaa -5'
28114 5' -61.4 NC_005887.1 + 15045 0.69 0.198933
Target:  5'- -gGCCUGcGCGGCcuGCGCGGCGuAGg- -3'
miRNA:   3'- agCGGGCuCGUCG--CGCGCCGCuUCaa -5'
28114 5' -61.4 NC_005887.1 + 33707 0.69 0.204254
Target:  5'- cUCGCCgaGcGCAGCGCGCGcuacGgGAAGUUc -3'
miRNA:   3'- -AGCGGg-CuCGUCGCGCGC----CgCUUCAA- -5'
28114 5' -61.4 NC_005887.1 + 28039 0.69 0.209698
Target:  5'- -gGCCCGAGcCGGCG-GCGGC-AAGa- -3'
miRNA:   3'- agCGGGCUC-GUCGCgCGCCGcUUCaa -5'
28114 5' -61.4 NC_005887.1 + 14090 0.68 0.215267
Target:  5'- cUGCgCCG-GCGGCGCGCcGGCGGu--- -3'
miRNA:   3'- aGCG-GGCuCGUCGCGCG-CCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 633 0.68 0.220962
Target:  5'- -aGCCgCGAugaaAGCGCGCGGCGAGc-- -3'
miRNA:   3'- agCGG-GCUcg--UCGCGCGCCGCUUcaa -5'
28114 5' -61.4 NC_005887.1 + 13567 0.68 0.226785
Target:  5'- cCGCCCGAGCAG-GC-CGacgacGCGAAGg- -3'
miRNA:   3'- aGCGGGCUCGUCgCGcGC-----CGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 1474 0.68 0.232737
Target:  5'- -aGCCCGAcGCcgacGGCGUGCGGCGc---- -3'
miRNA:   3'- agCGGGCU-CG----UCGCGCGCCGCuucaa -5'
28114 5' -61.4 NC_005887.1 + 24036 0.68 0.238821
Target:  5'- gCGCUCGAGCAGUGgGC--CGAGGUc -3'
miRNA:   3'- aGCGGGCUCGUCGCgCGccGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 18618 0.68 0.238821
Target:  5'- gUUGCUCG-GCAGCGCGauCGGCGGc--- -3'
miRNA:   3'- -AGCGGGCuCGUCGCGC--GCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 40161 0.68 0.238821
Target:  5'- cUCGCCgcgugUGAGCuGCGCGaCGGCacGAAGg- -3'
miRNA:   3'- -AGCGG-----GCUCGuCGCGC-GCCG--CUUCaa -5'
28114 5' -61.4 NC_005887.1 + 18089 0.67 0.251386
Target:  5'- -aGUCCGGcGCgcguaAGCGCGCGGCGGu--- -3'
miRNA:   3'- agCGGGCU-CG-----UCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 31186 0.67 0.251386
Target:  5'- gUGCUCGGGCAuGCGCGCGuaGAu--- -3'
miRNA:   3'- aGCGGGCUCGU-CGCGCGCcgCUucaa -5'
28114 5' -61.4 NC_005887.1 + 7124 0.67 0.251386
Target:  5'- -aGgCgGGGCGGCGCuGCGGCGccGUUc -3'
miRNA:   3'- agCgGgCUCGUCGCG-CGCCGCuuCAA- -5'
28114 5' -61.4 NC_005887.1 + 28413 0.67 0.25787
Target:  5'- gUCGCagCCGAGC-GCGCGCaGGCGcucGUg -3'
miRNA:   3'- -AGCG--GGCUCGuCGCGCG-CCGCuu-CAa -5'
28114 5' -61.4 NC_005887.1 + 27773 0.67 0.264491
Target:  5'- cCGCCguCGAGU-GCuaCGCGGCGAGGUa -3'
miRNA:   3'- aGCGG--GCUCGuCGc-GCGCCGCUUCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.