miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28114 5' -61.4 NC_005887.1 + 5285 1.05 0.000329
Target:  5'- gUCGCCCGAGCAGCGCGCGGCGAAGUUc -3'
miRNA:   3'- -AGCGGGCUCGUCGCGCGCCGCUUCAA- -5'
28114 5' -61.4 NC_005887.1 + 3470 0.76 0.056854
Target:  5'- cCGCCCugccagcGGUAGCGCGCGGCGAAc-- -3'
miRNA:   3'- aGCGGGc------UCGUCGCGCGCCGCUUcaa -5'
28114 5' -61.4 NC_005887.1 + 28635 0.75 0.067525
Target:  5'- gCGUCCGcGCAGCGgGCGGCGAc--- -3'
miRNA:   3'- aGCGGGCuCGUCGCgCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 29847 0.75 0.069481
Target:  5'- -gGCCCGAGCuGCGCgacGCGGCGAu--- -3'
miRNA:   3'- agCGGGCUCGuCGCG---CGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 11549 0.74 0.077867
Target:  5'- -aGCUCGGcgcGCAGCGCGCGGCGGu--- -3'
miRNA:   3'- agCGGGCU---CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 21874 0.74 0.077867
Target:  5'- gCGCCCG-GCAGCGcCGCGGaCGucGUg -3'
miRNA:   3'- aGCGGGCuCGUCGC-GCGCC-GCuuCAa -5'
28114 5' -61.4 NC_005887.1 + 34713 0.74 0.087217
Target:  5'- gUCGCgCuuGCGGUGCGCGGCGAuGUa -3'
miRNA:   3'- -AGCGgGcuCGUCGCGCGCCGCUuCAa -5'
28114 5' -61.4 NC_005887.1 + 2600 0.73 0.092284
Target:  5'- cCGCCCGAcagcgccuugcGCAGCGUGCGGCa----- -3'
miRNA:   3'- aGCGGGCU-----------CGUCGCGCGCCGcuucaa -5'
28114 5' -61.4 NC_005887.1 + 11788 0.73 0.100411
Target:  5'- uUCGUgCGcGCcguGCGCGCGGCGAAGc- -3'
miRNA:   3'- -AGCGgGCuCGu--CGCGCGCCGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 40835 0.73 0.103266
Target:  5'- cCGCCgGcucGGCGGCGCGCGGCGc---- -3'
miRNA:   3'- aGCGGgC---UCGUCGCGCGCCGCuucaa -5'
28114 5' -61.4 NC_005887.1 + 613 0.73 0.105902
Target:  5'- uUCGCgcuguauCCGGcGCGGCGCGCGGCGGc--- -3'
miRNA:   3'- -AGCG-------GGCU-CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 4386 0.72 0.125493
Target:  5'- -aGCCCGuugaacaaGGCAauGCGCGcCGGCGAAGg- -3'
miRNA:   3'- agCGGGC--------UCGU--CGCGC-GCCGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 27755 0.71 0.129009
Target:  5'- gUGgCCGAuGCcgAGCGCGcCGGCGAGGUa -3'
miRNA:   3'- aGCgGGCU-CG--UCGCGC-GCCGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 15003 0.71 0.140111
Target:  5'- gUCGUaCG-GCAGCGCGCGGCGugcgucgaucgcGAGUg -3'
miRNA:   3'- -AGCGgGCuCGUCGCGCGCCGC------------UUCAa -5'
28114 5' -61.4 NC_005887.1 + 9924 0.7 0.156275
Target:  5'- cCGUaCGAuguGCGGCGCGCGGCGuucAGGUUg -3'
miRNA:   3'- aGCGgGCU---CGUCGCGCGCCGC---UUCAA- -5'
28114 5' -61.4 NC_005887.1 + 15247 0.7 0.164976
Target:  5'- -gGCCCGAagcagGCAGCcgcagugcuGCGCGGCGAGcGUc -3'
miRNA:   3'- agCGGGCU-----CGUCG---------CGCGCCGCUU-CAa -5'
28114 5' -61.4 NC_005887.1 + 32862 0.7 0.174108
Target:  5'- gUGCCCGugaAGCGGCGCGCGcCGAu--- -3'
miRNA:   3'- aGCGGGC---UCGUCGCGCGCcGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 16222 0.7 0.174108
Target:  5'- aUCGCUCGcGCacucGGCGCGCcggugguuGGCGggGUg -3'
miRNA:   3'- -AGCGGGCuCG----UCGCGCG--------CCGCuuCAa -5'
28114 5' -61.4 NC_005887.1 + 2363 0.7 0.178842
Target:  5'- -aGCCCGGGUAGauCuCGGCGAGGUg -3'
miRNA:   3'- agCGGGCUCGUCgcGcGCCGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 11135 0.69 0.183689
Target:  5'- aUCGUuuGAGCAGCgGCGCGGaaaucAGUg -3'
miRNA:   3'- -AGCGggCUCGUCG-CGCGCCgcu--UCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.