miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28114 5' -61.4 NC_005887.1 + 1687 0.67 0.285179
Target:  5'- aUCGcCCCGAGCacgagcgcaAGCuGCGCGGCa----- -3'
miRNA:   3'- -AGC-GGGCUCG---------UCG-CGCGCCGcuucaa -5'
28114 5' -61.4 NC_005887.1 + 18618 0.68 0.238821
Target:  5'- gUUGCUCG-GCAGCGCGauCGGCGGc--- -3'
miRNA:   3'- -AGCGGGCuCGUCGCGC--GCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 40161 0.68 0.238821
Target:  5'- cUCGCCgcgugUGAGCuGCGCGaCGGCacGAAGg- -3'
miRNA:   3'- -AGCGG-----GCUCGuCGCGC-GCCG--CUUCaa -5'
28114 5' -61.4 NC_005887.1 + 7124 0.67 0.251386
Target:  5'- -aGgCgGGGCGGCGCuGCGGCGccGUUc -3'
miRNA:   3'- agCgGgCUCGUCGCG-CGCCGCuuCAA- -5'
28114 5' -61.4 NC_005887.1 + 31186 0.67 0.251386
Target:  5'- gUGCUCGGGCAuGCGCGCGuaGAu--- -3'
miRNA:   3'- aGCGGGCUCGU-CGCGCGCcgCUucaa -5'
28114 5' -61.4 NC_005887.1 + 28413 0.67 0.25787
Target:  5'- gUCGCagCCGAGC-GCGCGCaGGCGcucGUg -3'
miRNA:   3'- -AGCG--GGCUCGuCGCGCG-CCGCuu-CAa -5'
28114 5' -61.4 NC_005887.1 + 9733 0.67 0.278144
Target:  5'- aCGCCCG-GCAGCugaacaagcuuGCGUggauGGUGGAGUc -3'
miRNA:   3'- aGCGGGCuCGUCG-----------CGCG----CCGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 15013 0.67 0.278144
Target:  5'- cCGCCCGAGCugauGCuCGCGcUGAAGa- -3'
miRNA:   3'- aGCGGGCUCGu---CGcGCGCcGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 37850 0.67 0.285179
Target:  5'- aUUGCCCGccguAGCgGGCGCGguuguuaGGCGGAGa- -3'
miRNA:   3'- -AGCGGGC----UCG-UCGCGCg------CCGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 1474 0.68 0.232737
Target:  5'- -aGCCCGAcGCcgacGGCGUGCGGCGc---- -3'
miRNA:   3'- agCGGGCU-CG----UCGCGCGCCGCuucaa -5'
28114 5' -61.4 NC_005887.1 + 13567 0.68 0.226785
Target:  5'- cCGCCCGAGCAG-GC-CGacgacGCGAAGg- -3'
miRNA:   3'- aGCGGGCUCGUCgCGcGC-----CGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 633 0.68 0.220962
Target:  5'- -aGCCgCGAugaaAGCGCGCGGCGAGc-- -3'
miRNA:   3'- agCGG-GCUcg--UCGCGCGCCGCUUcaa -5'
28114 5' -61.4 NC_005887.1 + 11549 0.74 0.077867
Target:  5'- -aGCUCGGcgcGCAGCGCGCGGCGGu--- -3'
miRNA:   3'- agCGGGCU---CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 34713 0.74 0.087217
Target:  5'- gUCGCgCuuGCGGUGCGCGGCGAuGUa -3'
miRNA:   3'- -AGCGgGcuCGUCGCGCGCCGCUuCAa -5'
28114 5' -61.4 NC_005887.1 + 4386 0.72 0.125493
Target:  5'- -aGCCCGuugaacaaGGCAauGCGCGcCGGCGAAGg- -3'
miRNA:   3'- agCGGGC--------UCGU--CGCGC-GCCGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 27755 0.71 0.129009
Target:  5'- gUGgCCGAuGCcgAGCGCGcCGGCGAGGUa -3'
miRNA:   3'- aGCgGGCU-CG--UCGCGC-GCCGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 15247 0.7 0.164976
Target:  5'- -gGCCCGAagcagGCAGCcgcagugcuGCGCGGCGAGcGUc -3'
miRNA:   3'- agCGGGCU-----CGUCG---------CGCGCCGCUU-CAa -5'
28114 5' -61.4 NC_005887.1 + 24953 0.69 0.193733
Target:  5'- gCGCgCGGGCcgccuuGCGCGCGGCcgcGAGGg- -3'
miRNA:   3'- aGCGgGCUCGu-----CGCGCGCCG---CUUCaa -5'
28114 5' -61.4 NC_005887.1 + 30765 0.69 0.193733
Target:  5'- -aGCUCGAcCGuGCGCGCGGCG-AGUUc -3'
miRNA:   3'- agCGGGCUcGU-CGCGCGCCGCuUCAA- -5'
28114 5' -61.4 NC_005887.1 + 13609 0.69 0.193733
Target:  5'- aUCGCugCUGGcagcGCGGCGCGCGGCGGc--- -3'
miRNA:   3'- -AGCG--GGCU----CGUCGCGCGCCGCUucaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.