miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28114 5' -61.4 NC_005887.1 + 613 0.73 0.105902
Target:  5'- uUCGCgcuguauCCGGcGCGGCGCGCGGCGGc--- -3'
miRNA:   3'- -AGCG-------GGCU-CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 633 0.68 0.220962
Target:  5'- -aGCCgCGAugaaAGCGCGCGGCGAGc-- -3'
miRNA:   3'- agCGG-GCUcg--UCGCGCGCCGCUUcaa -5'
28114 5' -61.4 NC_005887.1 + 1474 0.68 0.232737
Target:  5'- -aGCCCGAcGCcgacGGCGUGCGGCGc---- -3'
miRNA:   3'- agCGGGCU-CG----UCGCGCGCCGCuucaa -5'
28114 5' -61.4 NC_005887.1 + 1687 0.67 0.285179
Target:  5'- aUCGcCCCGAGCacgagcgcaAGCuGCGCGGCa----- -3'
miRNA:   3'- -AGC-GGGCUCG---------UCG-CGCGCCGcuucaa -5'
28114 5' -61.4 NC_005887.1 + 2363 0.7 0.178842
Target:  5'- -aGCCCGGGUAGauCuCGGCGAGGUg -3'
miRNA:   3'- agCGGGCUCGUCgcGcGCCGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 2600 0.73 0.092284
Target:  5'- cCGCCCGAcagcgccuugcGCAGCGUGCGGCa----- -3'
miRNA:   3'- aGCGGGCU-----------CGUCGCGCGCCGcuucaa -5'
28114 5' -61.4 NC_005887.1 + 3470 0.76 0.056854
Target:  5'- cCGCCCugccagcGGUAGCGCGCGGCGAAc-- -3'
miRNA:   3'- aGCGGGc------UCGUCGCGCGCCGCUUcaa -5'
28114 5' -61.4 NC_005887.1 + 4386 0.72 0.125493
Target:  5'- -aGCCCGuugaacaaGGCAauGCGCGcCGGCGAAGg- -3'
miRNA:   3'- agCGGGC--------UCGU--CGCGC-GCCGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 4692 0.67 0.285179
Target:  5'- aUCGCgCCGgcGGCcaccGGCGcCGCGGCGAGc-- -3'
miRNA:   3'- -AGCG-GGC--UCG----UCGC-GCGCCGCUUcaa -5'
28114 5' -61.4 NC_005887.1 + 5285 1.05 0.000329
Target:  5'- gUCGCCCGAGCAGCGCGCGGCGAAGUUc -3'
miRNA:   3'- -AGCGGGCUCGUCGCGCGCCGCUUCAA- -5'
28114 5' -61.4 NC_005887.1 + 7124 0.67 0.251386
Target:  5'- -aGgCgGGGCGGCGCuGCGGCGccGUUc -3'
miRNA:   3'- agCgGgCUCGUCGCG-CGCCGCuuCAA- -5'
28114 5' -61.4 NC_005887.1 + 9733 0.67 0.278144
Target:  5'- aCGCCCG-GCAGCugaacaagcuuGCGUggauGGUGGAGUc -3'
miRNA:   3'- aGCGGGCuCGUCG-----------CGCG----CCGCUUCAa -5'
28114 5' -61.4 NC_005887.1 + 9924 0.7 0.156275
Target:  5'- cCGUaCGAuguGCGGCGCGCGGCGuucAGGUUg -3'
miRNA:   3'- aGCGgGCU---CGUCGCGCGCCGC---UUCAA- -5'
28114 5' -61.4 NC_005887.1 + 11135 0.69 0.183689
Target:  5'- aUCGUuuGAGCAGCgGCGCGGaaaucAGUg -3'
miRNA:   3'- -AGCGggCUCGUCG-CGCGCCgcu--UCAa -5'
28114 5' -61.4 NC_005887.1 + 11549 0.74 0.077867
Target:  5'- -aGCUCGGcgcGCAGCGCGCGGCGGu--- -3'
miRNA:   3'- agCGGGCU---CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 11788 0.73 0.100411
Target:  5'- uUCGUgCGcGCcguGCGCGCGGCGAAGc- -3'
miRNA:   3'- -AGCGgGCuCGu--CGCGCGCCGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 13567 0.68 0.226785
Target:  5'- cCGCCCGAGCAG-GC-CGacgacGCGAAGg- -3'
miRNA:   3'- aGCGGGCUCGUCgCGcGC-----CGCUUCaa -5'
28114 5' -61.4 NC_005887.1 + 13609 0.69 0.193733
Target:  5'- aUCGCugCUGGcagcGCGGCGCGCGGCGGc--- -3'
miRNA:   3'- -AGCG--GGCU----CGUCGCGCGCCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 14090 0.68 0.215267
Target:  5'- cUGCgCCG-GCGGCGCGCcGGCGGu--- -3'
miRNA:   3'- aGCG-GGCuCGUCGCGCG-CCGCUucaa -5'
28114 5' -61.4 NC_005887.1 + 14251 0.66 0.31472
Target:  5'- gCGCCCGA-CAGCGCGUGcaauCGAcGUa -3'
miRNA:   3'- aGCGGGCUcGUCGCGCGCc---GCUuCAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.