miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28116 3' -57.7 NC_005887.1 + 16791 0.67 0.477535
Target:  5'- uCCGACuugaucgcgccGGCCGuCaCGUACGUCuGUUCGa -3'
miRNA:   3'- -GGCUGu----------CCGGU-G-GCGUGCAGcCAAGC- -5'
28116 3' -57.7 NC_005887.1 + 17023 0.67 0.507957
Target:  5'- gCCGACAuuGCCGCC-CGCG-CGGUUg- -3'
miRNA:   3'- -GGCUGUc-CGGUGGcGUGCaGCCAAgc -5'
28116 3' -57.7 NC_005887.1 + 17282 0.71 0.29509
Target:  5'- aCGuCGGGCggCGCCGCGCGcgcaaacgcCGGUUCGg -3'
miRNA:   3'- gGCuGUCCG--GUGGCGUGCa--------GCCAAGC- -5'
28116 3' -57.7 NC_005887.1 + 18136 0.67 0.48657
Target:  5'- aCCGGCgaagcgcGGGCCGCCG-ACGUCGugcCGa -3'
miRNA:   3'- -GGCUG-------UCCGGUGGCgUGCAGCcaaGC- -5'
28116 3' -57.7 NC_005887.1 + 18995 0.7 0.333146
Target:  5'- gCCGAC-GGCCGCUGCGagauUCGGUgagCGc -3'
miRNA:   3'- -GGCUGuCCGGUGGCGUgc--AGCCAa--GC- -5'
28116 3' -57.7 NC_005887.1 + 20685 0.7 0.333146
Target:  5'- gUCGACGguGGCUA-CGCAUG-CGGUUCGg -3'
miRNA:   3'- -GGCUGU--CCGGUgGCGUGCaGCCAAGC- -5'
28116 3' -57.7 NC_005887.1 + 21103 0.66 0.539169
Target:  5'- aUCGGCGcGGUCGCCGCAaacaCGGUgcUCGc -3'
miRNA:   3'- -GGCUGU-CCGGUGGCGUgca-GCCA--AGC- -5'
28116 3' -57.7 NC_005887.1 + 21871 0.69 0.40123
Target:  5'- cCCGGCAGcGCCGCgG-ACGUCGuGUUg- -3'
miRNA:   3'- -GGCUGUC-CGGUGgCgUGCAGC-CAAgc -5'
28116 3' -57.7 NC_005887.1 + 22140 0.75 0.162704
Target:  5'- cCCGAC-GGCCGCCGUGCugguuGUgGGUUCa -3'
miRNA:   3'- -GGCUGuCCGGUGGCGUG-----CAgCCAAGc -5'
28116 3' -57.7 NC_005887.1 + 23302 0.67 0.477535
Target:  5'- gCCGACc-GCCGCCGCucgcgugcCGUCGGcgUGg -3'
miRNA:   3'- -GGCUGucCGGUGGCGu-------GCAGCCaaGC- -5'
28116 3' -57.7 NC_005887.1 + 24881 0.71 0.302422
Target:  5'- gCGGC-GGCCgauGCCGCGCGcUCGGUcuucuUCGc -3'
miRNA:   3'- gGCUGuCCGG---UGGCGUGC-AGCCA-----AGC- -5'
28116 3' -57.7 NC_005887.1 + 24938 0.68 0.457761
Target:  5'- gCGGCAucGGCCGCCGcCugGaCGGUg-- -3'
miRNA:   3'- gGCUGU--CCGGUGGC-GugCaGCCAagc -5'
28116 3' -57.7 NC_005887.1 + 24953 0.68 0.438434
Target:  5'- gCGcGCGGGCCGCCuuGCGCG-CGGccgCGa -3'
miRNA:   3'- gGC-UGUCCGGUGG--CGUGCaGCCaa-GC- -5'
28116 3' -57.7 NC_005887.1 + 25076 0.66 0.571008
Target:  5'- gCCGGC-GGCCGCCGgCGCGagcugacgcUCGGc--- -3'
miRNA:   3'- -GGCUGuCCGGUGGC-GUGC---------AGCCaagc -5'
28116 3' -57.7 NC_005887.1 + 25086 0.79 0.086231
Target:  5'- -gGugAGGCCGCCGC-CGUCGGauUUCGc -3'
miRNA:   3'- ggCugUCCGGUGGCGuGCAGCC--AAGC- -5'
28116 3' -57.7 NC_005887.1 + 27985 0.68 0.44804
Target:  5'- gCCGGCucGGGCCgaAUCGCGuCGUCGGccggCGu -3'
miRNA:   3'- -GGCUG--UCCGG--UGGCGU-GCAGCCaa--GC- -5'
28116 3' -57.7 NC_005887.1 + 29879 0.66 0.581727
Target:  5'- gCGGCAGGCCGagCGUACGgCGuUUCu -3'
miRNA:   3'- gGCUGUCCGGUg-GCGUGCaGCcAAGc -5'
28116 3' -57.7 NC_005887.1 + 32439 0.72 0.256584
Target:  5'- gCCGGCGGcgaucagguugcgcaGCCACUGCGCGgcgugCGGaUCGa -3'
miRNA:   3'- -GGCUGUC---------------CGGUGGCGUGCa----GCCaAGC- -5'
28116 3' -57.7 NC_005887.1 + 32831 0.66 0.560337
Target:  5'- gCCGACGugauGGCCGCCGUGCa--GGUcaagCGg -3'
miRNA:   3'- -GGCUGU----CCGGUGGCGUGcagCCAa---GC- -5'
28116 3' -57.7 NC_005887.1 + 33536 0.66 0.560337
Target:  5'- aCCGugAGcGCCugCuuCugGUCGGgugCGa -3'
miRNA:   3'- -GGCugUC-CGGugGc-GugCAGCCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.