Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 10782 | 0.68 | 0.44804 |
Target: 5'- aUCGaACAGcGgCACCGCGCGguccaUCGcGUUCGa -3' miRNA: 3'- -GGC-UGUC-CgGUGGCGUGC-----AGC-CAAGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 27985 | 0.68 | 0.44804 |
Target: 5'- gCCGGCucGGGCCgaAUCGCGuCGUCGGccggCGu -3' miRNA: 3'- -GGCUG--UCCGG--UGGCGU-GCAGCCaa--GC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 14674 | 0.68 | 0.44804 |
Target: 5'- uUCGACGcuGCC-CCGCACGaUCGGgcucgUCGc -3' miRNA: 3'- -GGCUGUc-CGGuGGCGUGC-AGCCa----AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 24938 | 0.68 | 0.457761 |
Target: 5'- gCGGCAucGGCCGCCGcCugGaCGGUg-- -3' miRNA: 3'- gGCUGU--CCGGUGGC-GugCaGCCAagc -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 33942 | 0.68 | 0.457761 |
Target: 5'- gCCGACGGcGCUcgGCgaGCACGUCGcGUgCGg -3' miRNA: 3'- -GGCUGUC-CGG--UGg-CGUGCAGC-CAaGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 40726 | 0.68 | 0.457761 |
Target: 5'- aCGACuucgAGGUCGCCGCccGCGUCGaggCGa -3' miRNA: 3'- gGCUG----UCCGGUGGCG--UGCAGCcaaGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 12902 | 0.67 | 0.477535 |
Target: 5'- aUCGGCAcGGCgaGCCaGCACGcCGGUUUc -3' miRNA: 3'- -GGCUGU-CCGg-UGG-CGUGCaGCCAAGc -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 35150 | 0.67 | 0.477535 |
Target: 5'- aCgGACGGGCgGCCGuCACGcugcacgaucUCGGccUCGa -3' miRNA: 3'- -GgCUGUCCGgUGGC-GUGC----------AGCCa-AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 23302 | 0.67 | 0.477535 |
Target: 5'- gCCGACc-GCCGCCGCucgcgugcCGUCGGcgUGg -3' miRNA: 3'- -GGCUGucCGGUGGCGu-------GCAGCCaaGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 16791 | 0.67 | 0.477535 |
Target: 5'- uCCGACuugaucgcgccGGCCGuCaCGUACGUCuGUUCGa -3' miRNA: 3'- -GGCUGu----------CCGGU-G-GCGUGCAGcCAAGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 18136 | 0.67 | 0.48657 |
Target: 5'- aCCGGCgaagcgcGGGCCGCCG-ACGUCGugcCGa -3' miRNA: 3'- -GGCUG-------UCCGGUGGCgUGCAGCcaaGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 13732 | 0.67 | 0.487579 |
Target: 5'- cCCGuCGcGCCGCUgaucgcguucuGCACGUCGGUgcugcUCGg -3' miRNA: 3'- -GGCuGUcCGGUGG-----------CGUGCAGCCA-----AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 1549 | 0.67 | 0.507957 |
Target: 5'- gCCGcGCgAGcGCCGCaCGC-CGUCGGcgUCGg -3' miRNA: 3'- -GGC-UG-UC-CGGUG-GCGuGCAGCCa-AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 17023 | 0.67 | 0.507957 |
Target: 5'- gCCGACAuuGCCGCC-CGCG-CGGUUg- -3' miRNA: 3'- -GGCUGUc-CGGUGGcGUGCaGCCAAgc -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 2215 | 0.67 | 0.507957 |
Target: 5'- aCCGAUGGGCgGCUGgCGCauccgGUCGGaagUCGu -3' miRNA: 3'- -GGCUGUCCGgUGGC-GUG-----CAGCCa--AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 12510 | 0.66 | 0.527643 |
Target: 5'- aCCGuACAGGCUcggguccaucgcgAUCGCGCGcgcgCGGUgUCGu -3' miRNA: 3'- -GGC-UGUCCGG-------------UGGCGUGCa---GCCA-AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 36298 | 0.66 | 0.528687 |
Target: 5'- uCCGGuuGGCCGauCUGCGCGgCGG-UCGa -3' miRNA: 3'- -GGCUguCCGGU--GGCGUGCaGCCaAGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 21103 | 0.66 | 0.539169 |
Target: 5'- aUCGGCGcGGUCGCCGCAaacaCGGUgcUCGc -3' miRNA: 3'- -GGCUGU-CCGGUGGCGUgca-GCCA--AGC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 3949 | 0.66 | 0.543382 |
Target: 5'- uCCGGCAuggcgucguaugccgGGCUGCCGCcguacacauCGUCGGUgcCGa -3' miRNA: 3'- -GGCUGU---------------CCGGUGGCGu--------GCAGCCAa-GC- -5' |
|||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 41019 | 0.66 | 0.549722 |
Target: 5'- -gGACAGGCgucuacuggCGCCGCGCGgugcaGG-UCGa -3' miRNA: 3'- ggCUGUCCG---------GUGGCGUGCag---CCaAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home