miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28116 3' -57.7 NC_005887.1 + 18136 0.67 0.48657
Target:  5'- aCCGGCgaagcgcGGGCCGCCG-ACGUCGugcCGa -3'
miRNA:   3'- -GGCUG-------UCCGGUGGCgUGCAGCcaaGC- -5'
28116 3' -57.7 NC_005887.1 + 12902 0.67 0.477535
Target:  5'- aUCGGCAcGGCgaGCCaGCACGcCGGUUUc -3'
miRNA:   3'- -GGCUGU-CCGg-UGG-CGUGCaGCCAAGc -5'
28116 3' -57.7 NC_005887.1 + 16791 0.67 0.477535
Target:  5'- uCCGACuugaucgcgccGGCCGuCaCGUACGUCuGUUCGa -3'
miRNA:   3'- -GGCUGu----------CCGGU-G-GCGUGCAGcCAAGC- -5'
28116 3' -57.7 NC_005887.1 + 23302 0.67 0.477535
Target:  5'- gCCGACc-GCCGCCGCucgcgugcCGUCGGcgUGg -3'
miRNA:   3'- -GGCUGucCGGUGGCGu-------GCAGCCaaGC- -5'
28116 3' -57.7 NC_005887.1 + 35150 0.67 0.477535
Target:  5'- aCgGACGGGCgGCCGuCACGcugcacgaucUCGGccUCGa -3'
miRNA:   3'- -GgCUGUCCGgUGGC-GUGC----------AGCCa-AGC- -5'
28116 3' -57.7 NC_005887.1 + 40726 0.68 0.457761
Target:  5'- aCGACuucgAGGUCGCCGCccGCGUCGaggCGa -3'
miRNA:   3'- gGCUG----UCCGGUGGCG--UGCAGCcaaGC- -5'
28116 3' -57.7 NC_005887.1 + 33942 0.68 0.457761
Target:  5'- gCCGACGGcGCUcgGCgaGCACGUCGcGUgCGg -3'
miRNA:   3'- -GGCUGUC-CGG--UGg-CGUGCAGC-CAaGC- -5'
28116 3' -57.7 NC_005887.1 + 24938 0.68 0.457761
Target:  5'- gCGGCAucGGCCGCCGcCugGaCGGUg-- -3'
miRNA:   3'- gGCUGU--CCGGUGGC-GugCaGCCAagc -5'
28116 3' -57.7 NC_005887.1 + 14674 0.68 0.44804
Target:  5'- uUCGACGcuGCC-CCGCACGaUCGGgcucgUCGc -3'
miRNA:   3'- -GGCUGUc-CGGuGGCGUGC-AGCCa----AGC- -5'
28116 3' -57.7 NC_005887.1 + 10782 0.68 0.44804
Target:  5'- aUCGaACAGcGgCACCGCGCGguccaUCGcGUUCGa -3'
miRNA:   3'- -GGC-UGUC-CgGUGGCGUGC-----AGC-CAAGC- -5'
28116 3' -57.7 NC_005887.1 + 27985 0.68 0.44804
Target:  5'- gCCGGCucGGGCCgaAUCGCGuCGUCGGccggCGu -3'
miRNA:   3'- -GGCUG--UCCGG--UGGCGU-GCAGCCaa--GC- -5'
28116 3' -57.7 NC_005887.1 + 24953 0.68 0.438434
Target:  5'- gCGcGCGGGCCGCCuuGCGCG-CGGccgCGa -3'
miRNA:   3'- gGC-UGUCCGGUGG--CGUGCaGCCaa-GC- -5'
28116 3' -57.7 NC_005887.1 + 12132 0.68 0.43748
Target:  5'- aCGAgCAGGCCGCCGuCGCGcgccagaUUGGUgacgaUCGc -3'
miRNA:   3'- gGCU-GUCCGGUGGC-GUGC-------AGCCA-----AGC- -5'
28116 3' -57.7 NC_005887.1 + 41664 0.68 0.435575
Target:  5'- gCCGGCcgccgcaccuGGGCCGCCGCugGccgacaggaacgucUCGGcgCu -3'
miRNA:   3'- -GGCUG----------UCCGGUGGCGugC--------------AGCCaaGc -5'
28116 3' -57.7 NC_005887.1 + 40859 0.68 0.428947
Target:  5'- aCCGGCGaaGCCGCCGCGCG-CG--UCGa -3'
miRNA:   3'- -GGCUGUc-CGGUGGCGUGCaGCcaAGC- -5'
28116 3' -57.7 NC_005887.1 + 10507 0.68 0.410343
Target:  5'- gCGAUGGGUgCACUGCGCcGUCGG-UCa -3'
miRNA:   3'- gGCUGUCCG-GUGGCGUG-CAGCCaAGc -5'
28116 3' -57.7 NC_005887.1 + 21871 0.69 0.40123
Target:  5'- cCCGGCAGcGCCGCgG-ACGUCGuGUUg- -3'
miRNA:   3'- -GGCUGUC-CGGUGgCgUGCAGC-CAAgc -5'
28116 3' -57.7 NC_005887.1 + 5113 0.7 0.349346
Target:  5'- uCCGGCGcGGCCAUUGCcgugccuuCGUUGGcUUCGg -3'
miRNA:   3'- -GGCUGU-CCGGUGGCGu-------GCAGCC-AAGC- -5'
28116 3' -57.7 NC_005887.1 + 11778 0.7 0.349346
Target:  5'- cUCGGCGGcGUCcucGCUGCucggcgGCGUCGGUUCGu -3'
miRNA:   3'- -GGCUGUC-CGG---UGGCG------UGCAGCCAAGC- -5'
28116 3' -57.7 NC_005887.1 + 20685 0.7 0.333146
Target:  5'- gUCGACGguGGCUA-CGCAUG-CGGUUCGg -3'
miRNA:   3'- -GGCUGU--CCGGUgGCGUGCaGCCAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.