Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28116 | 3' | -57.7 | NC_005887.1 | + | 17282 | 0.71 | 0.29509 |
Target: 5'- aCGuCGGGCggCGCCGCGCGcgcaaacgcCGGUUCGg -3' miRNA: 3'- gGCuGUCCG--GUGGCGUGCa--------GCCAAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 24881 | 0.71 | 0.302422 |
Target: 5'- gCGGC-GGCCgauGCCGCGCGcUCGGUcuucuUCGc -3' miRNA: 3'- gGCUGuCCGG---UGGCGUGC-AGCCA-----AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 20685 | 0.7 | 0.333146 |
Target: 5'- gUCGACGguGGCUA-CGCAUG-CGGUUCGg -3' miRNA: 3'- -GGCUGU--CCGGUgGCGUGCaGCCAAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 11778 | 0.7 | 0.349346 |
Target: 5'- cUCGGCGGcGUCcucGCUGCucggcgGCGUCGGUUCGu -3' miRNA: 3'- -GGCUGUC-CGG---UGGCG------UGCAGCCAAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 40859 | 0.68 | 0.428947 |
Target: 5'- aCCGGCGaaGCCGCCGCGCG-CG--UCGa -3' miRNA: 3'- -GGCUGUc-CGGUGGCGUGCaGCcaAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 12132 | 0.68 | 0.43748 |
Target: 5'- aCGAgCAGGCCGCCGuCGCGcgccagaUUGGUgacgaUCGc -3' miRNA: 3'- gGCU-GUCCGGUGGC-GUGC-------AGCCA-----AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 24953 | 0.68 | 0.438434 |
Target: 5'- gCGcGCGGGCCGCCuuGCGCG-CGGccgCGa -3' miRNA: 3'- gGC-UGUCCGGUGG--CGUGCaGCCaa-GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 14674 | 0.68 | 0.44804 |
Target: 5'- uUCGACGcuGCC-CCGCACGaUCGGgcucgUCGc -3' miRNA: 3'- -GGCUGUc-CGGuGGCGUGC-AGCCa----AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 12510 | 0.66 | 0.527643 |
Target: 5'- aCCGuACAGGCUcggguccaucgcgAUCGCGCGcgcgCGGUgUCGu -3' miRNA: 3'- -GGC-UGUCCGG-------------UGGCGUGCa---GCCA-AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 17023 | 0.67 | 0.507957 |
Target: 5'- gCCGACAuuGCCGCC-CGCG-CGGUUg- -3' miRNA: 3'- -GGCUGUc-CGGUGGcGUGCaGCCAAgc -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 1549 | 0.67 | 0.507957 |
Target: 5'- gCCGcGCgAGcGCCGCaCGC-CGUCGGcgUCGg -3' miRNA: 3'- -GGC-UG-UC-CGGUG-GCGuGCAGCCa-AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 13732 | 0.67 | 0.487579 |
Target: 5'- cCCGuCGcGCCGCUgaucgcguucuGCACGUCGGUgcugcUCGg -3' miRNA: 3'- -GGCuGUcCGGUGG-----------CGUGCAGCCA-----AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 16791 | 0.67 | 0.477535 |
Target: 5'- uCCGACuugaucgcgccGGCCGuCaCGUACGUCuGUUCGa -3' miRNA: 3'- -GGCUGu----------CCGGU-G-GCGUGCAGcCAAGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 3949 | 0.66 | 0.543382 |
Target: 5'- uCCGGCAuggcgucguaugccgGGCUGCCGCcguacacauCGUCGGUgcCGa -3' miRNA: 3'- -GGCUGU---------------CCGGUGGCGu--------GCAGCCAa-GC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 13041 | 0.66 | 0.560337 |
Target: 5'- gCCG-CGGGUCGCCGCu--UCGGUcUGg -3' miRNA: 3'- -GGCuGUCCGGUGGCGugcAGCCAaGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 9106 | 0.66 | 0.560337 |
Target: 5'- gCCGcgaACGGGCCGCCGacaaACGUcaCGGg--- -3' miRNA: 3'- -GGC---UGUCCGGUGGCg---UGCA--GCCaagc -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 25076 | 0.66 | 0.571008 |
Target: 5'- gCCGGC-GGCCGCCGgCGCGagcugacgcUCGGc--- -3' miRNA: 3'- -GGCUGuCCGGUGGC-GUGC---------AGCCaagc -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 36573 | 0.66 | 0.571008 |
Target: 5'- cCCGAUgcugcGGUCgACCGCACGguucCGGUgaUCGc -3' miRNA: 3'- -GGCUGu----CCGG-UGGCGUGCa---GCCA--AGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 4094 | 0.66 | 0.581727 |
Target: 5'- gUCGuuCAGGCCACCccaauucaGCGCGcCGGaaCGc -3' miRNA: 3'- -GGCu-GUCCGGUGG--------CGUGCaGCCaaGC- -5' |
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28116 | 3' | -57.7 | NC_005887.1 | + | 22140 | 0.75 | 0.162704 |
Target: 5'- cCCGAC-GGCCGCCGUGCugguuGUgGGUUCa -3' miRNA: 3'- -GGCUGuCCGGUGGCGUG-----CAgCCAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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