miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 3' -57.2 NC_001491.2 + 146507 0.69 0.655509
Target:  5'- gAGCGGCcGCGGCCGCgGCaGCcuUGCg -3'
miRNA:   3'- gUCGUCGuUGCUGGUGgCGcCG--AUGa -5'
2812 3' -57.2 NC_001491.2 + 146391 0.72 0.5043
Target:  5'- gCGGCAGCGGCGGCCuggGCCGgguagcCGGCcACg -3'
miRNA:   3'- -GUCGUCGUUGCUGG---UGGC------GCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 146251 0.74 0.403457
Target:  5'- gCGGCGGCucAUGGCCACCagGCGGCcGCg -3'
miRNA:   3'- -GUCGUCGu-UGCUGGUGG--CGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 145369 0.68 0.754391
Target:  5'- gAGCGGCAgcucuucggggugGCGGCC-CCaGCGGCcggGCg -3'
miRNA:   3'- gUCGUCGU-------------UGCUGGuGG-CGCCGa--UGa -5'
2812 3' -57.2 NC_001491.2 + 144874 0.71 0.580895
Target:  5'- gGGCGGCAGCcgccgggguaggagGACCGCCGCuGCcgGCg -3'
miRNA:   3'- gUCGUCGUUG--------------CUGGUGGCGcCGa-UGa -5'
2812 3' -57.2 NC_001491.2 + 144784 0.66 0.84434
Target:  5'- aCGGCGGaggGAUGACCACCGCcggGGUg--- -3'
miRNA:   3'- -GUCGUCg--UUGCUGGUGGCG---CCGauga -5'
2812 3' -57.2 NC_001491.2 + 138762 0.66 0.819312
Target:  5'- -uGCAGacACGugCG-CGCGGCUGCg -3'
miRNA:   3'- guCGUCguUGCugGUgGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 138116 0.69 0.655509
Target:  5'- uGGCGGCcccccCgGCCGCGGCUGCg -3'
miRNA:   3'- gUCGUCGuugcuGgUGGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 137698 0.67 0.774306
Target:  5'- -cGCGGCGGCGGCCguggaccgagcgGgCGCGGgaGCg -3'
miRNA:   3'- guCGUCGUUGCUGG------------UgGCGCCgaUGa -5'
2812 3' -57.2 NC_001491.2 + 137612 0.73 0.43869
Target:  5'- -cGCGGCAGCGGCCGCCccgggGCGGgaAUUu -3'
miRNA:   3'- guCGUCGUUGCUGGUGG-----CGCCgaUGA- -5'
2812 3' -57.2 NC_001491.2 + 136959 0.82 0.1269
Target:  5'- gCGGCAGCAGCcACCGCCucuGCGGCUGCc -3'
miRNA:   3'- -GUCGUCGUUGcUGGUGG---CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 129831 0.66 0.836181
Target:  5'- uGGUAGCcGCGguggugguaGCCGCgGUGGUUGCa -3'
miRNA:   3'- gUCGUCGuUGC---------UGGUGgCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 129523 0.66 0.84434
Target:  5'- aCAGCugugguuGUAGCGGCCGuuGUGGgaGCc -3'
miRNA:   3'- -GUCGu------CGUUGCUGGUggCGCCgaUGa -5'
2812 3' -57.2 NC_001491.2 + 127555 0.69 0.696165
Target:  5'- aCAGCAGCuccucggccgAugGGCgCAUCGCGGCa--- -3'
miRNA:   3'- -GUCGUCG----------UugCUG-GUGGCGCCGauga -5'
2812 3' -57.2 NC_001491.2 + 125600 0.7 0.645277
Target:  5'- gGGCGGCcGCuGCCGCgGCGGCgGCc -3'
miRNA:   3'- gUCGUCGuUGcUGGUGgCGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 123507 0.77 0.275133
Target:  5'- -cGCAGguACG-CCGCgGCGGCUGCg -3'
miRNA:   3'- guCGUCguUGCuGGUGgCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 123433 0.69 0.655509
Target:  5'- cCAGUAGCGcucuGCGuCCGCCGgCGGCg--- -3'
miRNA:   3'- -GUCGUCGU----UGCuGGUGGC-GCCGauga -5'
2812 3' -57.2 NC_001491.2 + 123036 0.78 0.238338
Target:  5'- gCGGCAGCGagaccGCGugCGCCGCGGUguccgUGCUg -3'
miRNA:   3'- -GUCGUCGU-----UGCugGUGGCGCCG-----AUGA- -5'
2812 3' -57.2 NC_001491.2 + 118755 0.66 0.84434
Target:  5'- aAGCGGCGcccgucguccgaGCGcCCGCCGCGGa-ACc -3'
miRNA:   3'- gUCGUCGU------------UGCuGGUGGCGCCgaUGa -5'
2812 3' -57.2 NC_001491.2 + 118360 0.76 0.323638
Target:  5'- cCGGCAGCGGCGGuccucCUACCccgGCGGCUGCc -3'
miRNA:   3'- -GUCGUCGUUGCU-----GGUGG---CGCCGAUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.