miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 11553 0.68 0.451687
Target:  5'- -cGGcgCGCAGCGcGCGGCggucGCGgaaUCGGGCu -3'
miRNA:   3'- caCCa-GCGUCGC-UGUCG----UGC---AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 12058 0.66 0.534754
Target:  5'- -aGG-CGCcGCGcuGCAGCAgGUCG-GCa -3'
miRNA:   3'- caCCaGCGuCGC--UGUCGUgCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 12172 0.67 0.482069
Target:  5'- cUGG-CGCuucugcGCGGcCAGCACGUCG-GUg -3'
miRNA:   3'- cACCaGCGu-----CGCU-GUCGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 12681 0.75 0.159816
Target:  5'- cUGGUCGgGcuucuGCGuCAGCACGcCGAGCg -3'
miRNA:   3'- cACCAGCgU-----CGCuGUCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 12808 0.8 0.07632
Target:  5'- -cGcGUUGCAGCG-CGGCGCGaUCGAGCg -3'
miRNA:   3'- caC-CAGCGUCGCuGUCGUGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 13274 0.71 0.287144
Target:  5'- -gGcGUCaGCAGCGACA-CACGUCGgccGGCg -3'
miRNA:   3'- caC-CAG-CGUCGCUGUcGUGCAGC---UCG- -5'
28121 5' -56.6 NC_005887.1 + 13625 0.71 0.317471
Target:  5'- -cGGcgCGCGGCGGCcGCACucaGcCGAGCa -3'
miRNA:   3'- caCCa-GCGUCGCUGuCGUG---CaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14337 0.67 0.524039
Target:  5'- -aGGUgaaCGCGGCGAUcgugaAGCAgCGUgcCGGGCa -3'
miRNA:   3'- caCCA---GCGUCGCUG-----UCGU-GCA--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14454 0.7 0.32542
Target:  5'- -aGGUCGUAcGCG-C-GCGCGcCGAGCg -3'
miRNA:   3'- caCCAGCGU-CGCuGuCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14502 0.68 0.432024
Target:  5'- cUGGucgaUCGCGGUuGC-GCGCGUCGGGUc -3'
miRNA:   3'- cACC----AGCGUCGcUGuCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14516 0.74 0.1784
Target:  5'- gGUGGUccgcuugcaggCGCGGCcgucGGCGGCGCGUCGAucgGCa -3'
miRNA:   3'- -CACCA-----------GCGUCG----CUGUCGUGCAGCU---CG- -5'
28121 5' -56.6 NC_005887.1 + 14701 0.66 0.589327
Target:  5'- --cGUCGCGGCG--GGCGgGcCGGGCg -3'
miRNA:   3'- cacCAGCGUCGCugUCGUgCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 15037 0.71 0.308897
Target:  5'- -cGGccugCGCGGCGuaggcgucgaguuGCGGCGCGUCGuacGGCa -3'
miRNA:   3'- caCCa---GCGUCGC-------------UGUCGUGCAGC---UCG- -5'
28121 5' -56.6 NC_005887.1 + 15257 0.66 0.567329
Target:  5'- -aGGcagcCGCAGUG-CuGCGCGgCGAGCg -3'
miRNA:   3'- caCCa---GCGUCGCuGuCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 15746 0.79 0.0882
Target:  5'- -cGGccgCGCGGCgGugAGCugGUCGAGCu -3'
miRNA:   3'- caCCa--GCGUCG-CugUCGugCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 15830 0.7 0.333516
Target:  5'- -aGGU-GCAGCGcuugcGCGGCGCGaUCGAGg -3'
miRNA:   3'- caCCAgCGUCGC-----UGUCGUGC-AGCUCg -5'
28121 5' -56.6 NC_005887.1 + 15964 0.72 0.239637
Target:  5'- -aGGUCGgcCAGCu---GCGCGUCGAGCg -3'
miRNA:   3'- caCCAGC--GUCGcuguCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 16259 0.68 0.432024
Target:  5'- -cGGUCGCAGCG-CGGCcuCuUCGcGCa -3'
miRNA:   3'- caCCAGCGUCGCuGUCGu-GcAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 17043 0.67 0.524039
Target:  5'- -cGGaugCGCAGCGGCA-CGC-UUGGGCg -3'
miRNA:   3'- caCCa--GCGUCGCUGUcGUGcAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 17402 0.69 0.363872
Target:  5'- cUGGUCGaucacguCGGCGGCAuggcgaagaacaucGCGCucGUCGAGCg -3'
miRNA:   3'- cACCAGC-------GUCGCUGU--------------CGUG--CAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.