miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 12294 0.73 0.126801
Target:  5'- uUGAUCAGguuuGGCgugaaaucCGGCGCGCccGGCGCGg -3'
miRNA:   3'- -ACUAGUCg---UCGa-------GCCGCGCG--UCGCGC- -5'
28126 3' -60 NC_005887.1 + 25495 0.73 0.130381
Target:  5'- ---gCGGCGGCUCGGacgaugGCGCGGCGgGu -3'
miRNA:   3'- acuaGUCGUCGAGCCg-----CGCGUCGCgC- -5'
28126 3' -60 NC_005887.1 + 26072 0.73 0.134055
Target:  5'- cUGGUCAGC-GCgucagCGGCccGCGCGGCGUu -3'
miRNA:   3'- -ACUAGUCGuCGa----GCCG--CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 7113 0.73 0.134055
Target:  5'- gUGGUCuaacgaGGCGGggCGGCGCuGCGGCGCc -3'
miRNA:   3'- -ACUAG------UCGUCgaGCCGCG-CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 16198 0.72 0.141689
Target:  5'- gUGGUUGGCGGggUGGUugcGCGCGGCGCa -3'
miRNA:   3'- -ACUAGUCGUCgaGCCG---CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 14642 0.72 0.145654
Target:  5'- ---aCGGCAGC-CGGCGCGguGCuGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGCGCguCG-CGc -5'
28126 3' -60 NC_005887.1 + 30757 0.72 0.14972
Target:  5'- -cGUCGGuCAGCUCGaccguGCGCGCGGCGa- -3'
miRNA:   3'- acUAGUC-GUCGAGC-----CGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 35397 0.72 0.153888
Target:  5'- gUGGcCGGCcGCcgCGGCGCGCGGCaGUGg -3'
miRNA:   3'- -ACUaGUCGuCGa-GCCGCGCGUCG-CGC- -5'
28126 3' -60 NC_005887.1 + 13626 0.72 0.153888
Target:  5'- -cGUCGGCcuGCUCgGGCG-GCAGCGCa -3'
miRNA:   3'- acUAGUCGu-CGAG-CCGCgCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 8180 0.71 0.162542
Target:  5'- cGAaCAGCGGCgccUCGGCgaGCGCGGCGa- -3'
miRNA:   3'- aCUaGUCGUCG---AGCCG--CGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 41010 0.71 0.162542
Target:  5'- cGGUCgAGCAugcGCUCGGCGUugccgaacucGguGCGCGc -3'
miRNA:   3'- aCUAG-UCGU---CGAGCCGCG----------CguCGCGC- -5'
28126 3' -60 NC_005887.1 + 15692 0.71 0.162542
Target:  5'- cUGAUCGGCgAGCcCGGcCGCcuGCuGCGCGa -3'
miRNA:   3'- -ACUAGUCG-UCGaGCC-GCG--CGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 32296 0.71 0.167031
Target:  5'- cGAUCgucgGGcCAGC-CGGCGCGCcgcAGUGCGu -3'
miRNA:   3'- aCUAG----UC-GUCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 490 0.71 0.171632
Target:  5'- cGAgcgCAGCaacAGCg-GGCgGCGCGGCGCGu -3'
miRNA:   3'- aCUa--GUCG---UCGagCCG-CGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 32741 0.71 0.176345
Target:  5'- aGcgCGGC-GCUCGcGUGCGCgccGGCGCGc -3'
miRNA:   3'- aCuaGUCGuCGAGC-CGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 722 0.71 0.186117
Target:  5'- cUGGUCGGCGGUcaugCGcGUGCGCucgccGCGCGc -3'
miRNA:   3'- -ACUAGUCGUCGa---GC-CGCGCGu----CGCGC- -5'
28126 3' -60 NC_005887.1 + 18100 0.71 0.186117
Target:  5'- -cGUCGGCcgucAGUcCGGCGCGCguaAGCGCGc -3'
miRNA:   3'- acUAGUCG----UCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 30713 0.7 0.19118
Target:  5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3'
miRNA:   3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 5218 0.7 0.196364
Target:  5'- aGcAUCAGCGGCgcgccgaCGuCGgGCAGCGCGg -3'
miRNA:   3'- aC-UAGUCGUCGa------GCcGCgCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 10169 0.7 0.20167
Target:  5'- cGAUCAGCuGGCcgUCGGCGCGgGcCGCc -3'
miRNA:   3'- aCUAGUCG-UCG--AGCCGCGCgUcGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.