miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 3' -51.8 NC_005887.1 + 37400 0.66 0.783282
Target:  5'- uGGCGCUGCGCGGucGCGACugccugCAcGCCAg -3'
miRNA:   3'- gUCGUGGCGCGUU--UGUUGca----GU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 15651 0.66 0.783282
Target:  5'- gGGCGCCGUgucGCAGAUGcGCGccgagcUCGACCAg -3'
miRNA:   3'- gUCGUGGCG---CGUUUGU-UGC------AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 27580 0.66 0.803764
Target:  5'- aAGUACaGCGCGAGCGcgcCGUCGAgCGu -3'
miRNA:   3'- gUCGUGgCGCGUUUGUu--GCAGUUgGU- -5'
28128 3' -51.8 NC_005887.1 + 15112 0.66 0.813714
Target:  5'- gAGaACCuGCGCAAguACGGCGUCAcggACCc -3'
miRNA:   3'- gUCgUGG-CGCGUU--UGUUGCAGU---UGGu -5'
28128 3' -51.8 NC_005887.1 + 8789 0.66 0.793616
Target:  5'- aCGGCAUCGCGUAuauGCucgaguuCGgCGACCAc -3'
miRNA:   3'- -GUCGUGGCGCGUu--UGuu-----GCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 2930 0.66 0.783282
Target:  5'- -cGCcaaGCUGCGCAAGCGccGCGgcaccgccgCGACCAu -3'
miRNA:   3'- guCG---UGGCGCGUUUGU--UGCa--------GUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 23393 0.66 0.793616
Target:  5'- -cGCGCUGcCGCuGGCAgccugcagcagcGCGUCGAUCAg -3'
miRNA:   3'- guCGUGGC-GCGuUUGU------------UGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 22262 0.66 0.803764
Target:  5'- aCGGUGgCGCGCAGcagGCGAucggauuucuCGUCGGCCu -3'
miRNA:   3'- -GUCGUgGCGCGUU---UGUU----------GCAGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 3857 0.66 0.783282
Target:  5'- uCGGCACCGaCGauguguACGGCGgCAGCCc -3'
miRNA:   3'- -GUCGUGGC-GCguu---UGUUGCaGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 9244 0.66 0.783282
Target:  5'- -uGCGCCGCGUcgGCGaucGCGUCuAUCu -3'
miRNA:   3'- guCGUGGCGCGuuUGU---UGCAGuUGGu -5'
28128 3' -51.8 NC_005887.1 + 11355 0.66 0.787437
Target:  5'- gAGCACacugagccugaucaGCGCGGGCGucaGCG-CAGCCGg -3'
miRNA:   3'- gUCGUGg-------------CGCGUUUGU---UGCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 39390 0.66 0.803764
Target:  5'- aGGCcgGCgGCGCAAcCGugGUCGcgACCGc -3'
miRNA:   3'- gUCG--UGgCGCGUUuGUugCAGU--UGGU- -5'
28128 3' -51.8 NC_005887.1 + 29974 0.66 0.813714
Target:  5'- aCAcCGCCGCGCGGAUGcUGUCGAgguCCAu -3'
miRNA:   3'- -GUcGUGGCGCGUUUGUuGCAGUU---GGU- -5'
28128 3' -51.8 NC_005887.1 + 39877 0.66 0.813714
Target:  5'- gAGCGCCucGCGCAucacgugaAugGUgGACCAg -3'
miRNA:   3'- gUCGUGG--CGCGUuug-----UugCAgUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 882 0.66 0.823452
Target:  5'- -cGCGCCGC-CGGACGA-GUCAGgCGg -3'
miRNA:   3'- guCGUGGCGcGUUUGUUgCAGUUgGU- -5'
28128 3' -51.8 NC_005887.1 + 4670 0.66 0.802758
Target:  5'- gCAGacCGCUGCGCAGACGGCGagGgucugaugggcgcGCCGa -3'
miRNA:   3'- -GUC--GUGGCGCGUUUGUUGCagU-------------UGGU- -5'
28128 3' -51.8 NC_005887.1 + 17053 0.66 0.813714
Target:  5'- gCGGCACgcuUGgGCGGACGcCGUCAuGCCGc -3'
miRNA:   3'- -GUCGUG---GCgCGUUUGUuGCAGU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 21590 0.66 0.823452
Target:  5'- cCGGCAUCGUcgGCAcgaccacgaacGAUAACGcaUCAGCCGg -3'
miRNA:   3'- -GUCGUGGCG--CGU-----------UUGUUGC--AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 39173 0.66 0.783282
Target:  5'- aCGGaCGCgCGCGagauccCGAAC-ACGUCGGCCAa -3'
miRNA:   3'- -GUC-GUG-GCGC------GUUUGuUGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 8994 0.66 0.812728
Target:  5'- aAGCuGCUGCGCAcaagcgcGACGACGUuuucucugCAGCCc -3'
miRNA:   3'- gUCG-UGGCGCGU-------UUGUUGCA--------GUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.