miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 3' -51.8 NC_005887.1 + 303 0.67 0.740341
Target:  5'- aGGCGCCGCagguCAAACAGCaccUCAcGCCAa -3'
miRNA:   3'- gUCGUGGCGc---GUUUGUUGc--AGU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 548 0.71 0.534897
Target:  5'- -cGCGCCGCGCcggauACAGCGcgaaGACCGc -3'
miRNA:   3'- guCGUGGCGCGuu---UGUUGCag--UUGGU- -5'
28128 3' -51.8 NC_005887.1 + 601 0.7 0.561991
Target:  5'- cCGGCGCgGCGC--GCGGCGgccgacgcguucagaUCGACCAg -3'
miRNA:   3'- -GUCGUGgCGCGuuUGUUGC---------------AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 655 0.67 0.740341
Target:  5'- gAGCGCaCGCGCAuGAC--CGcCGACCAg -3'
miRNA:   3'- gUCGUG-GCGCGU-UUGuuGCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 882 0.66 0.823452
Target:  5'- -cGCGCCGC-CGGACGA-GUCAGgCGg -3'
miRNA:   3'- guCGUGGCGcGUUUGUUgCAGUUgGU- -5'
28128 3' -51.8 NC_005887.1 + 1293 0.71 0.546135
Target:  5'- gAGCGCCGCGCA----GCGcCcGCCAg -3'
miRNA:   3'- gUCGUGGCGCGUuuguUGCaGuUGGU- -5'
28128 3' -51.8 NC_005887.1 + 1552 0.75 0.301426
Target:  5'- -cGCGCCGCGCGAGCGccgcacgccgucgGCGUCGGgCu -3'
miRNA:   3'- guCGUGGCGCGUUUGU-------------UGCAGUUgGu -5'
28128 3' -51.8 NC_005887.1 + 1695 0.69 0.626377
Target:  5'- gAGCACgaGCGCAAGCuGCGcggCAugCAg -3'
miRNA:   3'- gUCGUGg-CGCGUUUGuUGCa--GUugGU- -5'
28128 3' -51.8 NC_005887.1 + 2593 0.66 0.80074
Target:  5'- aCAGCGCCuuGCGCAGcguGCGGCaGUCcgggugcacgagcaGGCCGg -3'
miRNA:   3'- -GUCGUGG--CGCGUU---UGUUG-CAG--------------UUGGU- -5'
28128 3' -51.8 NC_005887.1 + 2872 0.7 0.580261
Target:  5'- aGGCGguggauaaCGCGCAGGCGacgacggacACGUCGGCCGc -3'
miRNA:   3'- gUCGUg-------GCGCGUUUGU---------UGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 2930 0.66 0.783282
Target:  5'- -cGCcaaGCUGCGCAAGCGccGCGgcaccgccgCGACCAu -3'
miRNA:   3'- guCG---UGGCGCGUUUGU--UGCa--------GUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 2992 0.7 0.579115
Target:  5'- gCGGCGCuUGCGCAGcuuggcgGCGGCGUCGuucgcggcgGCCGa -3'
miRNA:   3'- -GUCGUG-GCGCGUU-------UGUUGCAGU---------UGGU- -5'
28128 3' -51.8 NC_005887.1 + 3021 0.73 0.408351
Target:  5'- cCAGCGCCGCGggcaAAGCcAUGcUCGGCCAa -3'
miRNA:   3'- -GUCGUGGCGCg---UUUGuUGC-AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 3072 0.66 0.832969
Target:  5'- gCGGCGCUGgcCGCAGGCG-CGUUGACgGa -3'
miRNA:   3'- -GUCGUGGC--GCGUUUGUuGCAGUUGgU- -5'
28128 3' -51.8 NC_005887.1 + 3186 0.7 0.568826
Target:  5'- gCAGCuGCCGCGCccGGACAGCGagAaggGCCGc -3'
miRNA:   3'- -GUCG-UGGCGCG--UUUGUUGCagU---UGGU- -5'
28128 3' -51.8 NC_005887.1 + 3258 0.68 0.68405
Target:  5'- -cGCGCUGCGCA-ACuuCGUC-GCCGc -3'
miRNA:   3'- guCGUGGCGCGUuUGuuGCAGuUGGU- -5'
28128 3' -51.8 NC_005887.1 + 3310 0.67 0.729271
Target:  5'- -uGCGCaGCGCGAGCGGCG-CggUCGa -3'
miRNA:   3'- guCGUGgCGCGUUUGUUGCaGuuGGU- -5'
28128 3' -51.8 NC_005887.1 + 3456 0.7 0.568826
Target:  5'- gUAGCGCgCG-GCGAACAGCGUgCGcACCAc -3'
miRNA:   3'- -GUCGUG-GCgCGUUUGUUGCA-GU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 3673 0.74 0.343693
Target:  5'- aAGCGCUGCGCGGccuggcGCAACGUgAGCUc -3'
miRNA:   3'- gUCGUGGCGCGUU------UGUUGCAgUUGGu -5'
28128 3' -51.8 NC_005887.1 + 3857 0.66 0.783282
Target:  5'- uCGGCACCGaCGauguguACGGCGgCAGCCc -3'
miRNA:   3'- -GUCGUGGC-GCguu---UGUUGCaGUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.