miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 3' -51.8 NC_005887.1 + 12382 1.09 0.00151
Target:  5'- gCAGCACCGCGCAAACAACGUCAACCAg -3'
miRNA:   3'- -GUCGUGGCGCGUUUGUUGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 10907 0.84 0.08623
Target:  5'- gCAGC-CgGCGCAGAUGACGUCGGCCGg -3'
miRNA:   3'- -GUCGuGgCGCGUUUGUUGCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 30520 0.83 0.097211
Target:  5'- uCAGC-CCGCGUAGGCGGcCGUCGGCCGa -3'
miRNA:   3'- -GUCGuGGCGCGUUUGUU-GCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 27354 0.82 0.123243
Target:  5'- gCAGCGgCGCGCAGACgAGCGUCGGCa- -3'
miRNA:   3'- -GUCGUgGCGCGUUUG-UUGCAGUUGgu -5'
28128 3' -51.8 NC_005887.1 + 5418 0.78 0.195514
Target:  5'- gCGGCGCCGCaGCGAcCGGCG-CGACCAc -3'
miRNA:   3'- -GUCGUGGCG-CGUUuGUUGCaGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 19415 0.77 0.24406
Target:  5'- -cGCgucuGCUGCGCGAGCAugGUCAGCUu -3'
miRNA:   3'- guCG----UGGCGCGUUUGUugCAGUUGGu -5'
28128 3' -51.8 NC_005887.1 + 28207 0.75 0.299853
Target:  5'- uCAGCGCCGCGCGucucggcgguuuugAGCAGCGcgcgCAGCUu -3'
miRNA:   3'- -GUCGUGGCGCGU--------------UUGUUGCa---GUUGGu -5'
28128 3' -51.8 NC_005887.1 + 1552 0.75 0.301426
Target:  5'- -cGCGCCGCGCGAGCGccgcacgccgucgGCGUCGGgCu -3'
miRNA:   3'- guCGUGGCGCGUUUGU-------------UGCAGUUgGu -5'
28128 3' -51.8 NC_005887.1 + 7590 0.75 0.318328
Target:  5'- aCGGCAUCGCGUAAGCGGCGcCGGuuGa -3'
miRNA:   3'- -GUCGUGGCGCGUUUGUUGCaGUUggU- -5'
28128 3' -51.8 NC_005887.1 + 15982 0.75 0.326624
Target:  5'- cCGGC-CCGCGCGGaacGCAG-GUCGGCCAg -3'
miRNA:   3'- -GUCGuGGCGCGUU---UGUUgCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 22848 0.75 0.335079
Target:  5'- aCAGCgGCCGCGC---CGGCGUCgAGCCAa -3'
miRNA:   3'- -GUCG-UGGCGCGuuuGUUGCAG-UUGGU- -5'
28128 3' -51.8 NC_005887.1 + 13167 0.75 0.335079
Target:  5'- -cGCGCgCGCGCAGACAGCGggagCggUCGa -3'
miRNA:   3'- guCGUG-GCGCGUUUGUUGCa---GuuGGU- -5'
28128 3' -51.8 NC_005887.1 + 12058 0.75 0.335079
Target:  5'- aGGCGCCGCGCu-GCAGCagGUCGGCa- -3'
miRNA:   3'- gUCGUGGCGCGuuUGUUG--CAGUUGgu -5'
28128 3' -51.8 NC_005887.1 + 41544 0.75 0.335079
Target:  5'- aGGCGCucggCGCGCAcGCGAaGUCAGCCAg -3'
miRNA:   3'- gUCGUG----GCGCGUuUGUUgCAGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 29711 0.74 0.343693
Target:  5'- -cGCGCCGCGCGugaguGACGACGgcgagaUCAGCUAu -3'
miRNA:   3'- guCGUGGCGCGU-----UUGUUGC------AGUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 3673 0.74 0.343693
Target:  5'- aAGCGCUGCGCGGccuggcGCAACGUgAGCUc -3'
miRNA:   3'- gUCGUGGCGCGUU------UGUUGCAgUUGGu -5'
28128 3' -51.8 NC_005887.1 + 17212 0.74 0.352465
Target:  5'- -uGCGCCGCGCAAGCAggGCGUgugggacaCGAUCGc -3'
miRNA:   3'- guCGUGGCGCGUUUGU--UGCA--------GUUGGU- -5'
28128 3' -51.8 NC_005887.1 + 15265 0.74 0.352465
Target:  5'- gCAGUGCUGCGCGGcgAGCGUCcGCCGg -3'
miRNA:   3'- -GUCGUGGCGCGUUugUUGCAGuUGGU- -5'
28128 3' -51.8 NC_005887.1 + 40578 0.74 0.37048
Target:  5'- -cGCGCCGCGUGGuggaugccgaacACGACGUCGcGCCAc -3'
miRNA:   3'- guCGUGGCGCGUU------------UGUUGCAGU-UGGU- -5'
28128 3' -51.8 NC_005887.1 + 31661 0.74 0.37972
Target:  5'- uCAGCAUCGCGcCAGAagcCGUUAGCCGg -3'
miRNA:   3'- -GUCGUGGCGC-GUUUguuGCAGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.