miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2813 3' -60.6 NC_001491.2 + 117853 0.76 0.209756
Target:  5'- gGCCGCCACCcCGaagaGCUGCCGCUccggcGCCGCu -3'
miRNA:   3'- -UGGUGGUGGcGC----CGAUGGUGG-----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 118343 0.76 0.214818
Target:  5'- cCUACC-CCgGCGGCUGCCGCCcaGCCGg -3'
miRNA:   3'- uGGUGGuGG-CGCCGAUGGUGG--UGGCg -5'
2813 3' -60.6 NC_001491.2 + 144850 0.76 0.219984
Target:  5'- gACCGCCGCUGcCGGCgGCCgaggGCgACCGCu -3'
miRNA:   3'- -UGGUGGUGGC-GCCGaUGG----UGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 114444 0.76 0.230636
Target:  5'- cCCAUCACCGaGGCU-CC-CCGCCGCc -3'
miRNA:   3'- uGGUGGUGGCgCCGAuGGuGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 116724 0.76 0.230636
Target:  5'- gGCC-CCGaCGCaaGGCUGCCGCgGCCGCg -3'
miRNA:   3'- -UGGuGGUgGCG--CCGAUGGUGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 73975 0.75 0.241719
Target:  5'- cGCCGCCGCCGCaGCaGCCcucGCUcCCGCa -3'
miRNA:   3'- -UGGUGGUGGCGcCGaUGG---UGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 41294 0.75 0.247425
Target:  5'- uCCGCgGCCuuuGCGGCUuCCACCACCucGCg -3'
miRNA:   3'- uGGUGgUGG---CGCCGAuGGUGGUGG--CG- -5'
2813 3' -60.6 NC_001491.2 + 14346 0.73 0.310035
Target:  5'- aGCCGCUuCCGCGaaGCUGCCGCUuggcgcuGCCGUa -3'
miRNA:   3'- -UGGUGGuGGCGC--CGAUGGUGG-------UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 116594 0.73 0.310725
Target:  5'- -gCGCCuCCGCGGCgggGCguCCGCCGUc -3'
miRNA:   3'- ugGUGGuGGCGCCGa--UGguGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 125109 0.73 0.310725
Target:  5'- cGCCGCaGCCGCGGCcggggggGCCGCCAacuCCaGCg -3'
miRNA:   3'- -UGGUGgUGGCGCCGa------UGGUGGU---GG-CG- -5'
2813 3' -60.6 NC_001491.2 + 65562 0.73 0.324775
Target:  5'- aACCGCaGCaCGCGGUUuCCGCCAUCGUc -3'
miRNA:   3'- -UGGUGgUG-GCGCCGAuGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 141015 0.73 0.331975
Target:  5'- aACCACCAcccuacaacCCGCGcuagcGCUGCCAaaaagCGCCGCa -3'
miRNA:   3'- -UGGUGGU---------GGCGC-----CGAUGGUg----GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 118736 0.73 0.339292
Target:  5'- aGCgC-CCGCCGCGGaaccCCGCCACCGg -3'
miRNA:   3'- -UG-GuGGUGGCGCCgau-GGUGGUGGCg -5'
2813 3' -60.6 NC_001491.2 + 114265 0.72 0.361938
Target:  5'- aGCC-CCGgCGUGGCccagGCCcuCCGCCGCg -3'
miRNA:   3'- -UGGuGGUgGCGCCGa---UGGu-GGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 97585 0.72 0.377609
Target:  5'- gAUCGCCGcCCGCGGagagACgugguCGCCACCGCc -3'
miRNA:   3'- -UGGUGGU-GGCGCCga--UG-----GUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 37200 0.72 0.377609
Target:  5'- -aCAUCACCGUGGCgauaCACCGCCa- -3'
miRNA:   3'- ugGUGGUGGCGCCGaug-GUGGUGGcg -5'
2813 3' -60.6 NC_001491.2 + 141540 0.72 0.392097
Target:  5'- cGCC-CCGCCGUGGCgccccgaugugaACCGCC-UCGCg -3'
miRNA:   3'- -UGGuGGUGGCGCCGa-----------UGGUGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 7138 0.71 0.401956
Target:  5'- cACCGCCuauGCCGCGuuUACCAucugguauacccUCACCGCc -3'
miRNA:   3'- -UGGUGG---UGGCGCcgAUGGU------------GGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 41385 0.71 0.41029
Target:  5'- gGCCuuguCCAgCGCGGCUGCCACacuUUGUg -3'
miRNA:   3'- -UGGu---GGUgGCGCCGAUGGUGgu-GGCG- -5'
2813 3' -60.6 NC_001491.2 + 1790 0.71 0.418731
Target:  5'- cGCCGuCCAcgcCCGCGGCcGCUcuGCC-CCGCg -3'
miRNA:   3'- -UGGU-GGU---GGCGCCGaUGG--UGGuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.