miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2813 3' -60.6 NC_001491.2 + 148946 0.67 0.625144
Target:  5'- gGCCA-CGCCGgGGCUcggGCCggggugcucaACCACCaGCu -3'
miRNA:   3'- -UGGUgGUGGCgCCGA---UGG----------UGGUGG-CG- -5'
2813 3' -60.6 NC_001491.2 + 147920 0.67 0.644958
Target:  5'- cGCCgagaGCCGCCGgGGCgggagGCCGggaguCCGCCcaGCa -3'
miRNA:   3'- -UGG----UGGUGGCgCCGa----UGGU-----GGUGG--CG- -5'
2813 3' -60.6 NC_001491.2 + 147387 0.66 0.69419
Target:  5'- gGCCGCCGgcuCCaGgGGCUcggagcGCCGCuUGCCGCu -3'
miRNA:   3'- -UGGUGGU---GG-CgCCGA------UGGUG-GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 147051 0.69 0.533152
Target:  5'- uCCGCgGCCGCGGagccggagaaggGCuCGCCGCCGg -3'
miRNA:   3'- uGGUGgUGGCGCCga----------UG-GUGGUGGCg -5'
2813 3' -60.6 NC_001491.2 + 146839 0.7 0.471492
Target:  5'- gGCCACCACCagaaCGGC-GCgCACCGCgaggCGCa -3'
miRNA:   3'- -UGGUGGUGGc---GCCGaUG-GUGGUG----GCG- -5'
2813 3' -60.6 NC_001491.2 + 146503 0.77 0.199939
Target:  5'- gGCCGCgGCCGCGGCaGCCuugcgucgggGCCcgaggGCCGCg -3'
miRNA:   3'- -UGGUGgUGGCGCCGaUGG----------UGG-----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 146395 0.69 0.550487
Target:  5'- gGCCGCgGCaGCGGCgGCCugggccggguagccgGCCACgGCg -3'
miRNA:   3'- -UGGUGgUGgCGCCGaUGG---------------UGGUGgCG- -5'
2813 3' -60.6 NC_001491.2 + 146258 0.68 0.575817
Target:  5'- gAUCGuaGCgGCGGCUcaugGCCACCaggcgGCCGCg -3'
miRNA:   3'- -UGGUggUGgCGCCGA----UGGUGG-----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 145772 0.85 0.054915
Target:  5'- aGCCGCCGCCGgGGCcgaugcugcUGCUGCCGCCGCc -3'
miRNA:   3'- -UGGUGGUGGCgCCG---------AUGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 144850 0.76 0.219984
Target:  5'- gACCGCCGCUGcCGGCgGCCgaggGCgACCGCu -3'
miRNA:   3'- -UGGUGGUGGC-GCCGaUGG----UGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 144771 0.68 0.605351
Target:  5'- gACCACCGCCGgGGUggagAgcggagcgucguCCACC-CCGa -3'
miRNA:   3'- -UGGUGGUGGCgCCGa---U------------GGUGGuGGCg -5'
2813 3' -60.6 NC_001491.2 + 143149 0.67 0.674587
Target:  5'- aACCcUCACagauGCGGUUACUACaucuaACCGCu -3'
miRNA:   3'- -UGGuGGUGg---CGCCGAUGGUGg----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 141540 0.72 0.392097
Target:  5'- cGCC-CCGCCGUGGCgccccgaugugaACCGCC-UCGCg -3'
miRNA:   3'- -UGGuGGUGGCGCCGa-----------UGGUGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 141015 0.73 0.331975
Target:  5'- aACCACCAcccuacaacCCGCGcuagcGCUGCCAaaaagCGCCGCa -3'
miRNA:   3'- -UGGUGGU---------GGCGC-----CGAUGGUg----GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 140201 0.7 0.489819
Target:  5'- gACCAgcacggaCACCGCGGCgcacgcggucUCGCUGCCGCg -3'
miRNA:   3'- -UGGUg------GUGGCGCCGau--------GGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 140090 0.68 0.615242
Target:  5'- cGCCggGCCGCCcGCGGaggccugGCCGCgcgugUACCGCa -3'
miRNA:   3'- -UGG--UGGUGG-CGCCga-----UGGUG-----GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 139792 0.66 0.72321
Target:  5'- -aCGCCGCCgGCGGaCgcagagcGCUACUggGCCGCg -3'
miRNA:   3'- ugGUGGUGG-CGCC-Ga------UGGUGG--UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 139717 0.79 0.134954
Target:  5'- cGCCacgcaGCCGCCGCGGCgUACCugCGcgcCCGCg -3'
miRNA:   3'- -UGG-----UGGUGGCGCCG-AUGGugGU---GGCG- -5'
2813 3' -60.6 NC_001491.2 + 138312 0.67 0.63208
Target:  5'- gGCCACCACCcccucgaccggcacGCGGCacGgCACC-UCGCu -3'
miRNA:   3'- -UGGUGGUGG--------------CGCCGa-UgGUGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 138130 0.68 0.604363
Target:  5'- cUCGCCGCUggaguugGCGGCccccccgGCCGCgGCUGCg -3'
miRNA:   3'- uGGUGGUGG-------CGCCGa------UGGUGgUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.