miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28130 5' -53.9 NC_005887.1 + 11398 0.66 0.723591
Target:  5'- uCAGC-GUACCGG-CCGucGCGGUu- -3'
miRNA:   3'- uGUCGuUAUGGUCuGGCuuCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 14446 0.66 0.723591
Target:  5'- aACcGCGAUcgACCAGACCGu-GCaaGGCGu -3'
miRNA:   3'- -UGuCGUUA--UGGUCUGGCuuCG--CCGCu -5'
28130 5' -53.9 NC_005887.1 + 14107 0.66 0.712535
Target:  5'- aACGGCAucGUcUCAGGCUGcgccGGCGGCGc -3'
miRNA:   3'- -UGUCGU--UAuGGUCUGGCu---UCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 486 0.66 0.712535
Target:  5'- cGCAGCAAcAgCGGG-CGgcGCGGCGc -3'
miRNA:   3'- -UGUCGUUaUgGUCUgGCuuCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 26209 0.66 0.712535
Target:  5'- gGCGGCGGUgGCCGGcCUGcAGCuGGCGc -3'
miRNA:   3'- -UGUCGUUA-UGGUCuGGCuUCG-CCGCu -5'
28130 5' -53.9 NC_005887.1 + 17436 0.66 0.701395
Target:  5'- aACAGCGAgcCCucGCCGAAcUGGCGGu -3'
miRNA:   3'- -UGUCGUUauGGucUGGCUUcGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 36398 0.66 0.701395
Target:  5'- uCGGCcuAUACCuGGAUCGAGugcGCGGCGu -3'
miRNA:   3'- uGUCGu-UAUGG-UCUGGCUU---CGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 31903 0.66 0.701395
Target:  5'- -aAGCcGUAuUCGGAaCGggGCGGCGGc -3'
miRNA:   3'- ugUCGuUAU-GGUCUgGCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 31967 0.66 0.701395
Target:  5'- uGCAGCAgcAUGCCuGACCGGc-UGGCcGAc -3'
miRNA:   3'- -UGUCGU--UAUGGuCUGGCUucGCCG-CU- -5'
28130 5' -53.9 NC_005887.1 + 23635 0.66 0.690182
Target:  5'- aGCGGuCGAUACCAGGCUGuacGCGcUGAu -3'
miRNA:   3'- -UGUC-GUUAUGGUCUGGCuu-CGCcGCU- -5'
28130 5' -53.9 NC_005887.1 + 29346 0.66 0.690182
Target:  5'- gUAGCGGUACgCGGagaacccggcaGCCGcGAGCGGCa- -3'
miRNA:   3'- uGUCGUUAUG-GUC-----------UGGC-UUCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 39379 0.66 0.690182
Target:  5'- cGCAGUA--ACCgAGGCCG--GCGGCGc -3'
miRNA:   3'- -UGUCGUuaUGG-UCUGGCuuCGCCGCu -5'
28130 5' -53.9 NC_005887.1 + 20797 0.66 0.678909
Target:  5'- cGCAGUuuggAAUcGCCGuGAUCGguGCGGCGGa -3'
miRNA:   3'- -UGUCG----UUA-UGGU-CUGGCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 11384 0.66 0.678909
Target:  5'- uCAGCGcaGCCGGAgCGcuGGCGGCc- -3'
miRNA:   3'- uGUCGUuaUGGUCUgGCu-UCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 41600 0.66 0.667589
Target:  5'- gGCGGCccaGGUGCgGcGGCCGgcGCGGCc- -3'
miRNA:   3'- -UGUCG---UUAUGgU-CUGGCuuCGCCGcu -5'
28130 5' -53.9 NC_005887.1 + 41031 0.66 0.667589
Target:  5'- uACAuCAGgcCCGcGCCGAAGCGGuCGAg -3'
miRNA:   3'- -UGUcGUUauGGUcUGGCUUCGCC-GCU- -5'
28130 5' -53.9 NC_005887.1 + 39085 0.66 0.667589
Target:  5'- cGCAGCAAgccGCCGucGACUGc-GCGGUGGc -3'
miRNA:   3'- -UGUCGUUa--UGGU--CUGGCuuCGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 26706 0.66 0.667589
Target:  5'- gACAGCccgAUCgAGGCCauGAAcGCGGCGAg -3'
miRNA:   3'- -UGUCGuuaUGG-UCUGG--CUU-CGCCGCU- -5'
28130 5' -53.9 NC_005887.1 + 22373 0.66 0.66532
Target:  5'- aACAGCucuuuugugauUGCCAGACCGAAcaGGCcGAc -3'
miRNA:   3'- -UGUCGuu---------AUGGUCUGGCUUcgCCG-CU- -5'
28130 5' -53.9 NC_005887.1 + 7477 0.67 0.656233
Target:  5'- gGCGGCG--GCgGGugCGAccGUGGCGAu -3'
miRNA:   3'- -UGUCGUuaUGgUCugGCUu-CGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.