Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28131 | 5' | -54.5 | NC_005887.1 | + | 24968 | 0.68 | 0.630229 |
Target: 5'- uGCG-CGCGGcCGCGAggGacaGGUCGGg -3' miRNA: 3'- gCGCgGUGCUaGCGCUuaCg--CUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 12106 | 0.68 | 0.629121 |
Target: 5'- gGCGCCuguguugucuucgACGGUUGCGAgcggcGUGCGugcgcCGGa -3' miRNA: 3'- gCGCGG-------------UGCUAGCGCU-----UACGCua---GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 17255 | 0.68 | 0.619149 |
Target: 5'- gGCGUCAauaaGAUCGUGccggGCGAgacgUCGGg -3' miRNA: 3'- gCGCGGUg---CUAGCGCuua-CGCU----AGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 33801 | 0.68 | 0.619149 |
Target: 5'- gCGCGgacCCACGGccaccaCGCGggUGUcaGGUCGGc -3' miRNA: 3'- -GCGC---GGUGCUa-----GCGCuuACG--CUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 12433 | 0.68 | 0.608081 |
Target: 5'- gGCGCgCGCGAUCGCGAuggaccCGAgccuguaCGGu -3' miRNA: 3'- gCGCG-GUGCUAGCGCUuac---GCUa------GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 8519 | 0.68 | 0.608081 |
Target: 5'- uGCGCCGggcgcuCGAUCGCGuugacGCGGaucgcUCGGc -3' miRNA: 3'- gCGCGGU------GCUAGCGCuua--CGCU-----AGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 8299 | 0.68 | 0.608081 |
Target: 5'- gCGCGUCAcCGAUC-CGAAcGCGAU-GGa -3' miRNA: 3'- -GCGCGGU-GCUAGcGCUUaCGCUAgCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 5830 | 0.68 | 0.597034 |
Target: 5'- gGCGCg--GGUCGCGAAggGCGAagCGGa -3' miRNA: 3'- gCGCGgugCUAGCGCUUa-CGCUa-GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 41385 | 0.68 | 0.586017 |
Target: 5'- gGCGUCACGAcCGUGA-UGCGGUguuccuugccCGGc -3' miRNA: 3'- gCGCGGUGCUaGCGCUuACGCUA----------GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 30729 | 0.68 | 0.586017 |
Target: 5'- uCGCGCUGCGuggccuUCGCGAcuucGCcGUCGGu -3' miRNA: 3'- -GCGCGGUGCu-----AGCGCUua--CGcUAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 12710 | 0.68 | 0.586017 |
Target: 5'- gCGCGCaCGCuGGUCGCGcagcagcagAAUGCGcUCGa -3' miRNA: 3'- -GCGCG-GUG-CUAGCGC---------UUACGCuAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 15654 | 0.68 | 0.582719 |
Target: 5'- uGCGCUgcgucucagcuucgGCGAUCaGCGAAUcgagcGCGGUCGc -3' miRNA: 3'- gCGCGG--------------UGCUAG-CGCUUA-----CGCUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 14343 | 0.68 | 0.575039 |
Target: 5'- -aCGCgGCGAUCGUGAAgcaGCGugcCGGg -3' miRNA: 3'- gcGCGgUGCUAGCGCUUa--CGCua-GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 11073 | 0.68 | 0.575039 |
Target: 5'- cCGCGCCgcugcucaaACGAUucCGCGug-GCGcAUCGGc -3' miRNA: 3'- -GCGCGG---------UGCUA--GCGCuuaCGC-UAGCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 40151 | 0.69 | 0.564109 |
Target: 5'- gCGCGCCGCGcUCGCcGcGUGUGAgcugCGc -3' miRNA: 3'- -GCGCGGUGCuAGCG-CuUACGCUa---GCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 28570 | 0.69 | 0.553234 |
Target: 5'- gCGuCGCCGCccgcugCGCGGAcGCGGUCGa -3' miRNA: 3'- -GC-GCGGUGcua---GCGCUUaCGCUAGCc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 42021 | 0.69 | 0.553234 |
Target: 5'- uGuCGCCGCGG-CGCGcGAUGCGuacaaggCGGa -3' miRNA: 3'- gC-GCGGUGCUaGCGC-UUACGCua-----GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 10421 | 0.69 | 0.542423 |
Target: 5'- gGCGUUACGGUCGCG-GUGCuGAccgaCGGc -3' miRNA: 3'- gCGCGGUGCUAGCGCuUACG-CUa---GCC- -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 11783 | 0.69 | 0.531683 |
Target: 5'- gCGCGCCguGCGcgCgGCGAA-GCGAUCu- -3' miRNA: 3'- -GCGCGG--UGCuaG-CGCUUaCGCUAGcc -5' |
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28131 | 5' | -54.5 | NC_005887.1 | + | 4406 | 0.69 | 0.521021 |
Target: 5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3' miRNA: 3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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