miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28131 5' -54.5 NC_005887.1 + 11073 0.68 0.575039
Target:  5'- cCGCGCCgcugcucaaACGAUucCGCGug-GCGcAUCGGc -3'
miRNA:   3'- -GCGCGG---------UGCUA--GCGCuuaCGC-UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14343 0.68 0.575039
Target:  5'- -aCGCgGCGAUCGUGAAgcaGCGugcCGGg -3'
miRNA:   3'- gcGCGgUGCUAGCGCUUa--CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 40151 0.69 0.564109
Target:  5'- gCGCGCCGCGcUCGCcGcGUGUGAgcugCGc -3'
miRNA:   3'- -GCGCGGUGCuAGCG-CuUACGCUa---GCc -5'
28131 5' -54.5 NC_005887.1 + 42021 0.69 0.553234
Target:  5'- uGuCGCCGCGG-CGCGcGAUGCGuacaaggCGGa -3'
miRNA:   3'- gC-GCGGUGCUaGCGC-UUACGCua-----GCC- -5'
28131 5' -54.5 NC_005887.1 + 28570 0.69 0.553234
Target:  5'- gCGuCGCCGCccgcugCGCGGAcGCGGUCGa -3'
miRNA:   3'- -GC-GCGGUGcua---GCGCUUaCGCUAGCc -5'
28131 5' -54.5 NC_005887.1 + 10421 0.69 0.542423
Target:  5'- gGCGUUACGGUCGCG-GUGCuGAccgaCGGc -3'
miRNA:   3'- gCGCGGUGCUAGCGCuUACG-CUa---GCC- -5'
28131 5' -54.5 NC_005887.1 + 4406 0.69 0.521021
Target:  5'- gCGCGCCgGCGAagGCGcg-GCGAUCc- -3'
miRNA:   3'- -GCGCGG-UGCUagCGCuuaCGCUAGcc -5'
28131 5' -54.5 NC_005887.1 + 39398 0.69 0.521021
Target:  5'- gGCGCaaccgUGGUCGCGAccGCGuUCGGc -3'
miRNA:   3'- gCGCGgu---GCUAGCGCUuaCGCuAGCC- -5'
28131 5' -54.5 NC_005887.1 + 23223 0.7 0.499955
Target:  5'- aGgGCCACGccgacggcaCGCGAGcggcgGCGGUCGGc -3'
miRNA:   3'- gCgCGGUGCua-------GCGCUUa----CGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 797 0.7 0.493709
Target:  5'- aGCGCgagcuCGCGAUCGCGAucaacagccaugcucGcGCGAUCGcGg -3'
miRNA:   3'- gCGCG-----GUGCUAGCGCU---------------UaCGCUAGC-C- -5'
28131 5' -54.5 NC_005887.1 + 16582 0.66 0.72875
Target:  5'- gGCGCCgGCG---GCGAc-GCGAUCGGc -3'
miRNA:   3'- gCGCGG-UGCuagCGCUuaCGCUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 40579 0.66 0.72875
Target:  5'- gCGCGCCGCG-UgGUGGAUGcCGAa--- -3'
miRNA:   3'- -GCGCGGUGCuAgCGCUUAC-GCUagcc -5'
28131 5' -54.5 NC_005887.1 + 18464 0.66 0.722336
Target:  5'- gGCGCCGCGGcguaggccaucggguUCGCGA--GCGc-CGGc -3'
miRNA:   3'- gCGCGGUGCU---------------AGCGCUuaCGCuaGCC- -5'
28131 5' -54.5 NC_005887.1 + 22950 0.66 0.718042
Target:  5'- uGCGCCACcaGcgCGCGAGgaucugauaGCGGcCGGc -3'
miRNA:   3'- gCGCGGUG--CuaGCGCUUa--------CGCUaGCC- -5'
28131 5' -54.5 NC_005887.1 + 8932 0.66 0.72875
Target:  5'- gGCGUCGCGAUCuCGAcggGCGcgcCGGc -3'
miRNA:   3'- gCGCGGUGCUAGcGCUua-CGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 22620 0.66 0.73936
Target:  5'- aGCGUCucgggcauguCGAUCGCGGAcggcaUGCGcagCGGc -3'
miRNA:   3'- gCGCGGu---------GCUAGCGCUU-----ACGCua-GCC- -5'
28131 5' -54.5 NC_005887.1 + 36913 0.66 0.73936
Target:  5'- gCGCGUCGCGAUCcaGCGcaagGCuGUCGa -3'
miRNA:   3'- -GCGCGGUGCUAG--CGCuua-CGcUAGCc -5'
28131 5' -54.5 NC_005887.1 + 2312 0.66 0.746723
Target:  5'- gCGCGcCCAUGcucGUCGCGAcgacuuccgaccggAUGCGccagccgcccAUCGGu -3'
miRNA:   3'- -GCGC-GGUGC---UAGCGCU--------------UACGC----------UAGCC- -5'
28131 5' -54.5 NC_005887.1 + 17922 0.66 0.749861
Target:  5'- gGC-CCACGucGUCGCGAG-GUuGUCGGu -3'
miRNA:   3'- gCGcGGUGC--UAGCGCUUaCGcUAGCC- -5'
28131 5' -54.5 NC_005887.1 + 14079 0.81 0.110577
Target:  5'- gCGCGCCgGCGGUUGCGGAgGCGcgCGGc -3'
miRNA:   3'- -GCGCGG-UGCUAGCGCUUaCGCuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.