miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28133 5' -55 NC_005887.1 + 26428 0.68 0.574441
Target:  5'- cGCGCGGGAACGcgcgcUgCAGccGCGCg -3'
miRNA:   3'- cCGCGCCCUUGCuaa--AgGUCu-CGCGg -5'
28133 5' -55 NC_005887.1 + 26014 0.7 0.447035
Target:  5'- cGGCGuCGGGGGCGAgg-CUaccggggauugaaAGGGCGUa -3'
miRNA:   3'- -CCGC-GCCCUUGCUaaaGG-------------UCUCGCGg -5'
28133 5' -55 NC_005887.1 + 24088 0.69 0.51915
Target:  5'- aGGCauggaaGGGAuuuACGAUgugcggcaggagaUUCCcGAGCGCCg -3'
miRNA:   3'- -CCGcg----CCCU---UGCUA-------------AAGGuCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 23345 0.71 0.381738
Target:  5'- cGGCGCGGGcuGCGGcaaccgCCAcGAgcuGCGCCu -3'
miRNA:   3'- -CCGCGCCCu-UGCUaaa---GGU-CU---CGCGG- -5'
28133 5' -55 NC_005887.1 + 23202 0.65 0.707206
Target:  5'- cGGC-CGGGGGCGGcuacUUCaAGGGCcacGCCg -3'
miRNA:   3'- -CCGcGCCCUUGCUa---AAGgUCUCG---CGG- -5'
28133 5' -55 NC_005887.1 + 21375 0.68 0.563467
Target:  5'- cGGCGCGGuGGGCGugcccgugaauGUgggcgacgCCAGcAGCGCa -3'
miRNA:   3'- -CCGCGCC-CUUGC-----------UAaa------GGUC-UCGCGg -5'
28133 5' -55 NC_005887.1 + 19188 0.7 0.448027
Target:  5'- cGGCGCGGGcGugGAga--CAGgcGGCGCg -3'
miRNA:   3'- -CCGCGCCC-UugCUaaagGUC--UCGCGg -5'
28133 5' -55 NC_005887.1 + 18457 0.7 0.428429
Target:  5'- cGGCGUaggccaucGGGuucGCGAgcgCCGGcGCGCCg -3'
miRNA:   3'- -CCGCG--------CCCu--UGCUaaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 17651 0.72 0.346909
Target:  5'- aGCGCGGGAuugACGGgcgugUUCGucGCGCCg -3'
miRNA:   3'- cCGCGCCCU---UGCUaa---AGGUcuCGCGG- -5'
28133 5' -55 NC_005887.1 + 17172 0.66 0.668749
Target:  5'- aGGCGUGGGAGCGcgcgaacgcggCCGcacgcggcaauguuGCGCCg -3'
miRNA:   3'- -CCGCGCCCUUGCuaaa-------GGUcu------------CGCGG- -5'
28133 5' -55 NC_005887.1 + 16208 0.68 0.585463
Target:  5'- cGGCGCGccggugguuggcGGggUGGUUgcgCgCGGcgcAGCGCCa -3'
miRNA:   3'- -CCGCGC------------CCuuGCUAAa--G-GUC---UCGCGG- -5'
28133 5' -55 NC_005887.1 + 16096 0.66 0.696291
Target:  5'- uGGCcgGUGGuGaAACGcUUUCCGGuGGCGCUg -3'
miRNA:   3'- -CCG--CGCC-C-UUGCuAAAGGUC-UCGCGG- -5'
28133 5' -55 NC_005887.1 + 15930 0.72 0.355399
Target:  5'- cGCGCGGGccggaauCGAUgcgCCGGccacGCGCCg -3'
miRNA:   3'- cCGCGCCCuu-----GCUAaa-GGUCu---CGCGG- -5'
28133 5' -55 NC_005887.1 + 15916 0.65 0.707206
Target:  5'- uGCGCGcGGGCG-UUUCCcucGAucGCGCCg -3'
miRNA:   3'- cCGCGCcCUUGCuAAAGGu--CU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 15629 0.69 0.5096
Target:  5'- aGGCGgcCGGGcuCGccgaUCAGGGCGCCg -3'
miRNA:   3'- -CCGC--GCCCuuGCuaaaGGUCUCGCGG- -5'
28133 5' -55 NC_005887.1 + 14701 0.66 0.685312
Target:  5'- cGuCGCGGcGGGCGGg--CCGG-GCGCg -3'
miRNA:   3'- cC-GCGCC-CUUGCUaaaGGUCuCGCGg -5'
28133 5' -55 NC_005887.1 + 14081 0.65 0.707206
Target:  5'- cGGCGCGccGGCGGUUg-CGGAGgCGCg -3'
miRNA:   3'- -CCGCGCccUUGCUAAagGUCUC-GCGg -5'
28133 5' -55 NC_005887.1 + 14054 0.68 0.574441
Target:  5'- cGGCGCauucuucgucGGGAACGucaggugcaccGUgaCCGGcGCGCCc -3'
miRNA:   3'- -CCGCG----------CCCUUGC-----------UAaaGGUCuCGCGG- -5'
28133 5' -55 NC_005887.1 + 13965 0.65 0.707206
Target:  5'- gGGCGCGcGGucACGGUgcaccugacgUUCCcgacgaAGAauGCGCCg -3'
miRNA:   3'- -CCGCGC-CCu-UGCUA----------AAGG------UCU--CGCGG- -5'
28133 5' -55 NC_005887.1 + 13759 1.01 0.003362
Target:  5'- uGGCGCGaGGACGAUUUCCAGAGCGCCg -3'
miRNA:   3'- -CCGCGCcCUUGCUAAAGGUCUCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.