miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 15586 0.71 0.385548
Target:  5'- -cUGAUCGCCGaagcugagacgcaGCgcacgggcgucgcGCAGCaGGCGGCCg -3'
miRNA:   3'- cuACUAGCGGC-------------UGa------------UGUUG-CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 3714 0.71 0.39846
Target:  5'- --cGAgCGUCGACUGCAuggACGGCgacagguuuucacGGCCg -3'
miRNA:   3'- cuaCUaGCGGCUGAUGU---UGCCG-------------CCGG- -5'
28135 3' -54.6 NC_005887.1 + 32909 0.71 0.408798
Target:  5'- aGAUGc-CGCUuGAcCUGC-ACGGCGGCCa -3'
miRNA:   3'- -CUACuaGCGG-CU-GAUGuUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13390 0.7 0.428017
Target:  5'- -cUGAagGCCGGCgcgGCGGacguCGGCGGCa -3'
miRNA:   3'- cuACUagCGGCUGa--UGUU----GCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 39073 0.7 0.44776
Target:  5'- -----cCGUCGACUGC-GCGGUGGCa -3'
miRNA:   3'- cuacuaGCGGCUGAUGuUGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 36000 0.7 0.44776
Target:  5'- cGUGAucaUCGCCGugUGgc-CGGaCGGCCg -3'
miRNA:   3'- cUACU---AGCGGCugAUguuGCC-GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 27708 0.7 0.44776
Target:  5'- ----cUCGCCGcguagcACU-CGACGGCGGUCa -3'
miRNA:   3'- cuacuAGCGGC------UGAuGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 34942 0.7 0.457818
Target:  5'- ---cGUCGCCGGCUuCGAacuCGGCGGgCg -3'
miRNA:   3'- cuacUAGCGGCUGAuGUU---GCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 23472 0.7 0.467997
Target:  5'- -cUGAUCGaCGcGCUGCuGCGGCuGCCa -3'
miRNA:   3'- cuACUAGCgGC-UGAUGuUGCCGcCGG- -5'
28135 3' -54.6 NC_005887.1 + 13095 0.7 0.467997
Target:  5'- --cGAUCGCgGaguGCUGCAG-GGCGuGCCg -3'
miRNA:   3'- cuaCUAGCGgC---UGAUGUUgCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 3011 0.7 0.472101
Target:  5'- gGAUGGUCGCggcggugccgCGGCgcuugcgcagcuugGCGgcggcgucguucGCGGCGGCCg -3'
miRNA:   3'- -CUACUAGCG----------GCUGa-------------UGU------------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 21566 0.69 0.478291
Target:  5'- --cGuugCGCCGAUUGC--CGGCGGCg -3'
miRNA:   3'- cuaCua-GCGGCUGAUGuuGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 1478 0.69 0.478291
Target:  5'- --cGA-CGCCGACggcgUGCGGCGcucgcgcggcGCGGCCg -3'
miRNA:   3'- cuaCUaGCGGCUG----AUGUUGC----------CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4893 0.69 0.485562
Target:  5'- cGAUGGUCGCCGAggGC--CGGCGcgagguguucgugcGCCu -3'
miRNA:   3'- -CUACUAGCGGCUgaUGuuGCCGC--------------CGG- -5'
28135 3' -54.6 NC_005887.1 + 8948 0.69 0.487649
Target:  5'- --aGAgCGCCGAC-ACGauguaccuguuucACGGCGGCa -3'
miRNA:   3'- cuaCUaGCGGCUGaUGU-------------UGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 24950 0.69 0.499203
Target:  5'- cGUGcgCGCgGGCcGCcuuGCGcGCGGCCg -3'
miRNA:   3'- cUACuaGCGgCUGaUGu--UGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 26869 0.69 0.502375
Target:  5'- gGAUGAaauucagaaggcgcUCGCCGACUGC-ACGaucucgcucgaccCGGCCg -3'
miRNA:   3'- -CUACU--------------AGCGGCUGAUGuUGCc------------GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13321 0.69 0.509811
Target:  5'- --cGAUCGgcaaCGAau-CGACGGCGGUCa -3'
miRNA:   3'- cuaCUAGCg---GCUgauGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 22604 0.69 0.509811
Target:  5'- --cGAUCGCgGACgGCAugcGCaGCGGCUu -3'
miRNA:   3'- cuaCUAGCGgCUGaUGU---UGcCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 6038 0.69 0.520513
Target:  5'- -uUGAUCGUCG-CUGCAucgcCGGaCGcGCCa -3'
miRNA:   3'- cuACUAGCGGCuGAUGUu---GCC-GC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.