miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 15224 1.11 0.000623
Target:  5'- cGAUGAUCGCCGACUACAACGGCGGCCc -3'
miRNA:   3'- -CUACUAGCGGCUGAUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 10008 0.84 0.0603
Target:  5'- --aGAUCGCCGACcACAucACGcGCGGCCg -3'
miRNA:   3'- cuaCUAGCGGCUGaUGU--UGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4515 0.82 0.071959
Target:  5'- -cUGcUCGCCGACUACGGCGGCGuCCc -3'
miRNA:   3'- cuACuAGCGGCUGAUGUUGCCGCcGG- -5'
28135 3' -54.6 NC_005887.1 + 977 0.79 0.12839
Target:  5'- aGGUGAUCGCCGACacgcGCAAUuGCcGGCCg -3'
miRNA:   3'- -CUACUAGCGGCUGa---UGUUGcCG-CCGG- -5'
28135 3' -54.6 NC_005887.1 + 39915 0.78 0.143788
Target:  5'- cGGUGAgcgGUCGAUugaugUGCGACGGCGGCCc -3'
miRNA:   3'- -CUACUag-CGGCUG-----AUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 12213 0.75 0.223414
Target:  5'- --cGAUCGUCaccaaucuGGCgcGCGACGGCGGCCu -3'
miRNA:   3'- cuaCUAGCGG--------CUGa-UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4615 0.75 0.229469
Target:  5'- aGAUGcUCGCCG-CgGCGcCGGUGGCCg -3'
miRNA:   3'- -CUACuAGCGGCuGaUGUuGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 40838 0.75 0.235662
Target:  5'- --cGAcCGCCGGCUcgGCGGCGcGCGGCg -3'
miRNA:   3'- cuaCUaGCGGCUGA--UGUUGC-CGCCGg -5'
28135 3' -54.6 NC_005887.1 + 26503 0.75 0.235662
Target:  5'- --gGAucUCGCgCGGCUGCAGCGcgcguucccgcGCGGCCg -3'
miRNA:   3'- cuaCU--AGCG-GCUGAUGUUGC-----------CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 25159 0.74 0.261847
Target:  5'- --cGGUCG-CGAaauccgACGGCGGCGGCCu -3'
miRNA:   3'- cuaCUAGCgGCUga----UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 26185 0.74 0.268752
Target:  5'- cGAUGAUCGgguaGAUgaaaacgggGCGGCGGUGGCCg -3'
miRNA:   3'- -CUACUAGCgg--CUGa--------UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 23229 0.74 0.268752
Target:  5'- -----aCGCCGACggcacgcgaGCGGCGGCGGUCg -3'
miRNA:   3'- cuacuaGCGGCUGa--------UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 32840 0.74 0.275804
Target:  5'- --cGAUCcugcgcacgaGCCGGCUGCAugGcGCGcGCCg -3'
miRNA:   3'- cuaCUAG----------CGGCUGAUGUugC-CGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 10354 0.73 0.283003
Target:  5'- cGUGGaCGCCGguaucACgUACAACGGCGuGCCg -3'
miRNA:   3'- cUACUaGCGGC-----UG-AUGUUGCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 33580 0.73 0.320428
Target:  5'- cGGUGAUCGCCGACaagaucgcgcggaUGCugAACGGCGauCCg -3'
miRNA:   3'- -CUACUAGCGGCUG-------------AUG--UUGCCGCc-GG- -5'
28135 3' -54.6 NC_005887.1 + 36300 0.73 0.321229
Target:  5'- --cGGUUgGCCGAuCUGC-GCGGCGGUCg -3'
miRNA:   3'- cuaCUAG-CGGCU-GAUGuUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 29492 0.72 0.337566
Target:  5'- cGAUGucguaGCCGGCggccuCGACGGCGGgCg -3'
miRNA:   3'- -CUACuag--CGGCUGau---GUUGCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 23530 0.72 0.366704
Target:  5'- ---cGUCGCCGGCUGCcgggcuuccgguggaAGCGGCGGg- -3'
miRNA:   3'- cuacUAGCGGCUGAUG---------------UUGCCGCCgg -5'
28135 3' -54.6 NC_005887.1 + 6746 0.71 0.372023
Target:  5'- -----aUGCgGACgGCAACGGCGGUCg -3'
miRNA:   3'- cuacuaGCGgCUGaUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 5212 0.71 0.381003
Target:  5'- aGcgGcgCGCCGACgucggGCAGCG-CGGUCa -3'
miRNA:   3'- -CuaCuaGCGGCUGa----UGUUGCcGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.