miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 23012 0.69 0.520513
Target:  5'- --cGGUCGCUu-CUGCGagGCGGUGGCg -3'
miRNA:   3'- cuaCUAGCGGcuGAUGU--UGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 13390 0.7 0.428017
Target:  5'- -cUGAagGCCGGCgcgGCGGacguCGGCGGCa -3'
miRNA:   3'- cuACUagCGGCUGa--UGUU----GCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 27708 0.7 0.44776
Target:  5'- ----cUCGCCGcguagcACU-CGACGGCGGUCa -3'
miRNA:   3'- cuacuAGCGGC------UGAuGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 34942 0.7 0.457818
Target:  5'- ---cGUCGCCGGCUuCGAacuCGGCGGgCg -3'
miRNA:   3'- cuacUAGCGGCUGAuGUU---GCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 13095 0.7 0.467997
Target:  5'- --cGAUCGCgGaguGCUGCAG-GGCGuGCCg -3'
miRNA:   3'- cuaCUAGCGgC---UGAUGUUgCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 1478 0.69 0.478291
Target:  5'- --cGA-CGCCGACggcgUGCGGCGcucgcgcggcGCGGCCg -3'
miRNA:   3'- cuaCUaGCGGCUG----AUGUUGC----------CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4893 0.69 0.485562
Target:  5'- cGAUGGUCGCCGAggGC--CGGCGcgagguguucgugcGCCu -3'
miRNA:   3'- -CUACUAGCGGCUgaUGuuGCCGC--------------CGG- -5'
28135 3' -54.6 NC_005887.1 + 8948 0.69 0.487649
Target:  5'- --aGAgCGCCGAC-ACGauguaccuguuucACGGCGGCa -3'
miRNA:   3'- cuaCUaGCGGCUGaUGU-------------UGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 24950 0.69 0.499203
Target:  5'- cGUGcgCGCgGGCcGCcuuGCGcGCGGCCg -3'
miRNA:   3'- cUACuaGCGgCUGaUGu--UGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 15586 0.71 0.385548
Target:  5'- -cUGAUCGCCGaagcugagacgcaGCgcacgggcgucgcGCAGCaGGCGGCCg -3'
miRNA:   3'- cuACUAGCGGC-------------UGa------------UGUUG-CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 6746 0.71 0.372023
Target:  5'- -----aUGCgGACgGCAACGGCGGUCg -3'
miRNA:   3'- cuacuaGCGgCUGaUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 29492 0.72 0.337566
Target:  5'- cGAUGucguaGCCGGCggccuCGACGGCGGgCg -3'
miRNA:   3'- -CUACuag--CGGCUGau---GUUGCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 10008 0.84 0.0603
Target:  5'- --aGAUCGCCGACcACAucACGcGCGGCCg -3'
miRNA:   3'- cuaCUAGCGGCUGaUGU--UGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4515 0.82 0.071959
Target:  5'- -cUGcUCGCCGACUACGGCGGCGuCCc -3'
miRNA:   3'- cuACuAGCGGCUGAUGUUGCCGCcGG- -5'
28135 3' -54.6 NC_005887.1 + 977 0.79 0.12839
Target:  5'- aGGUGAUCGCCGACacgcGCAAUuGCcGGCCg -3'
miRNA:   3'- -CUACUAGCGGCUGa---UGUUGcCG-CCGG- -5'
28135 3' -54.6 NC_005887.1 + 4615 0.75 0.229469
Target:  5'- aGAUGcUCGCCG-CgGCGcCGGUGGCCg -3'
miRNA:   3'- -CUACuAGCGGCuGaUGUuGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 23229 0.74 0.268752
Target:  5'- -----aCGCCGACggcacgcgaGCGGCGGCGGUCg -3'
miRNA:   3'- cuacuaGCGGCUGa--------UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 26185 0.74 0.268752
Target:  5'- cGAUGAUCGgguaGAUgaaaacgggGCGGCGGUGGCCg -3'
miRNA:   3'- -CUACUAGCgg--CUGa--------UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 10354 0.73 0.283003
Target:  5'- cGUGGaCGCCGguaucACgUACAACGGCGuGCCg -3'
miRNA:   3'- cUACUaGCGGC-----UG-AUGUUGCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 36300 0.73 0.321229
Target:  5'- --cGGUUgGCCGAuCUGC-GCGGCGGUCg -3'
miRNA:   3'- cuaCUAG-CGGCU-GAUGuUGCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.