miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 6982 0.66 0.708957
Target:  5'- -----aUGCCGAgUUGCGGgauucgcuCGGCGGCCa -3'
miRNA:   3'- cuacuaGCGGCU-GAUGUU--------GCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 14102 0.67 0.619826
Target:  5'- ---cAUCGUCucaGGCUGCGcCGGCGGCg -3'
miRNA:   3'- cuacUAGCGG---CUGAUGUuGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 28471 0.67 0.608623
Target:  5'- --cGcgCGCuCGGCUGCGACGuGCGcgugacgacaGCCg -3'
miRNA:   3'- cuaCuaGCG-GCUGAUGUUGC-CGC----------CGG- -5'
28135 3' -54.6 NC_005887.1 + 39915 0.78 0.143788
Target:  5'- cGGUGAgcgGUCGAUugaugUGCGACGGCGGCCc -3'
miRNA:   3'- -CUACUag-CGGCUG-----AUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 1592 0.66 0.705667
Target:  5'- --cGGUCGUCGACaGCAGgucCGGguacguguuccgcaCGGCCg -3'
miRNA:   3'- cuaCUAGCGGCUGaUGUU---GCC--------------GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 9304 0.66 0.697967
Target:  5'- --cGAUCGCCGAC----GCGGCGcaguucGCUa -3'
miRNA:   3'- cuaCUAGCGGCUGauguUGCCGC------CGG- -5'
28135 3' -54.6 NC_005887.1 + 12641 0.66 0.68691
Target:  5'- --gGGUCGgCGGacaccaUGCGcaugcCGGCGGCCg -3'
miRNA:   3'- cuaCUAGCgGCUg-----AUGUu----GCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13039 0.66 0.68025
Target:  5'- cGcgGGUCGCCGcuucggucugguauuGCUGUAGCGucGCGGCUu -3'
miRNA:   3'- -CuaCUAGCGGC---------------UGAUGUUGC--CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 32396 0.67 0.657938
Target:  5'- ----uUCGCCGGCaucggcgugugguccUACGcacuGCGGCGcGCCg -3'
miRNA:   3'- cuacuAGCGGCUG---------------AUGU----UGCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 38442 0.67 0.63104
Target:  5'- --aGAUCGCaaugugcaaCGA--ACGACGGCGGaCCu -3'
miRNA:   3'- cuaCUAGCG---------GCUgaUGUUGCCGCC-GG- -5'
28135 3' -54.6 NC_005887.1 + 4701 0.67 0.642255
Target:  5'- --aGAUCcUUGAUcGCGcCGGCGGCCa -3'
miRNA:   3'- cuaCUAGcGGCUGaUGUuGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 26388 0.66 0.663529
Target:  5'- -----gCGCCGGCcacggccugaaccUGCAggACGGCGGCa -3'
miRNA:   3'- cuacuaGCGGCUG-------------AUGU--UGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 16478 0.66 0.708957
Target:  5'- --cGAUCucgGCCGcgugaGCUucCGGcCGGCGGCCg -3'
miRNA:   3'- cuaCUAG---CGGC-----UGAu-GUU-GCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 24319 0.67 0.642255
Target:  5'- --cGAcUCGCCGugGCUGCugcCGGCacguGGCCa -3'
miRNA:   3'- cuaCU-AGCGGC--UGAUGuu-GCCG----CCGG- -5'
28135 3' -54.6 NC_005887.1 + 1891 0.66 0.708957
Target:  5'- cGUG-UCGCCGAagaUGCcguaccagguCGGCGGCa -3'
miRNA:   3'- cUACuAGCGGCUg--AUGuu--------GCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 8027 0.66 0.6758
Target:  5'- ---uGUCGCCGAuCUucguCAGCGcGCGGUUa -3'
miRNA:   3'- cuacUAGCGGCU-GAu---GUUGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 618 0.67 0.640013
Target:  5'- --cGGUCuucgcgcuguauCCGGCgcgGCGcGCGGCGGCCg -3'
miRNA:   3'- cuaCUAGc-----------GGCUGa--UGU-UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 14696 0.67 0.613102
Target:  5'- -----gCGCCGGCUGCcgugagcgcgcccucGACGGCgccgacGGCCg -3'
miRNA:   3'- cuacuaGCGGCUGAUG---------------UUGCCG------CCGG- -5'
28135 3' -54.6 NC_005887.1 + 13674 0.66 0.708957
Target:  5'- --cGcgCGCCGcGCUgccaGCAGCGaugaaguacGCGGCCu -3'
miRNA:   3'- cuaCuaGCGGC-UGA----UGUUGC---------CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 37762 0.66 0.697967
Target:  5'- -cUGAUCGCCcccGGCgucgcuUGCAugcGgGGCGGCUg -3'
miRNA:   3'- cuACUAGCGG---CUG------AUGU---UgCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.