miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 618 0.67 0.640013
Target:  5'- --cGGUCuucgcgcuguauCCGGCgcgGCGcGCGGCGGCCg -3'
miRNA:   3'- cuaCUAGc-----------GGCUGa--UGU-UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 875 0.66 0.68691
Target:  5'- cGUGGcccgCGCCGcCggACGAgucaGGCGGCCu -3'
miRNA:   3'- cUACUa---GCGGCuGa-UGUUg---CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 977 0.79 0.12839
Target:  5'- aGGUGAUCGCCGACacgcGCAAUuGCcGGCCg -3'
miRNA:   3'- -CUACUAGCGGCUGa---UGUUGcCG-CCGG- -5'
28135 3' -54.6 NC_005887.1 + 1074 0.68 0.564115
Target:  5'- ------aGCCgGugUACAgcgcgcgcACGGCGGCCg -3'
miRNA:   3'- cuacuagCGG-CugAUGU--------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 1478 0.69 0.478291
Target:  5'- --cGA-CGCCGACggcgUGCGGCGcucgcgcggcGCGGCCg -3'
miRNA:   3'- cuaCUaGCGGCUG----AUGUUGC----------CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 1592 0.66 0.705667
Target:  5'- --cGGUCGUCGACaGCAGgucCGGguacguguuccgcaCGGCCg -3'
miRNA:   3'- cuaCUAGCGGCUGaUGUU---GCC--------------GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 1891 0.66 0.708957
Target:  5'- cGUG-UCGCCGAagaUGCcguaccagguCGGCGGCa -3'
miRNA:   3'- cUACuAGCGGCUg--AUGuu--------GCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 2325 0.68 0.564115
Target:  5'- --aGGUCGCUGGCaucuaugGCGAucCGGCGGgCg -3'
miRNA:   3'- cuaCUAGCGGCUGa------UGUU--GCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 2473 0.68 0.542169
Target:  5'- --cGAggCGCUGACgcggaucauCGACGGCGaGCCc -3'
miRNA:   3'- cuaCUa-GCGGCUGau-------GUUGCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 3011 0.7 0.472101
Target:  5'- gGAUGGUCGCggcggugccgCGGCgcuugcgcagcuugGCGgcggcgucguucGCGGCGGCCg -3'
miRNA:   3'- -CUACUAGCG----------GCUGa-------------UGU------------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 3714 0.71 0.39846
Target:  5'- --cGAgCGUCGACUGCAuggACGGCgacagguuuucacGGCCg -3'
miRNA:   3'- cuaCUaGCGGCUGAUGU---UGCCG-------------CCGG- -5'
28135 3' -54.6 NC_005887.1 + 3719 0.68 0.586289
Target:  5'- --cGcgCGCCGACcGCGAUccgcgcaagcuGGaCGGCCg -3'
miRNA:   3'- cuaCuaGCGGCUGaUGUUG-----------CC-GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 3741 0.68 0.564115
Target:  5'- --aGAUCGCCGACUuCu-CGG-GGUCu -3'
miRNA:   3'- cuaCUAGCGGCUGAuGuuGCCgCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4515 0.82 0.071959
Target:  5'- -cUGcUCGCCGACUACGGCGGCGuCCc -3'
miRNA:   3'- cuACuAGCGGCUGAUGUUGCCGCcGG- -5'
28135 3' -54.6 NC_005887.1 + 4615 0.75 0.229469
Target:  5'- aGAUGcUCGCCG-CgGCGcCGGUGGCCg -3'
miRNA:   3'- -CUACuAGCGGCuGaUGUuGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4701 0.67 0.642255
Target:  5'- --aGAUCcUUGAUcGCGcCGGCGGCCa -3'
miRNA:   3'- cuaCUAGcGGCUGaUGUuGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 4893 0.69 0.485562
Target:  5'- cGAUGGUCGCCGAggGC--CGGCGcgagguguucgugcGCCu -3'
miRNA:   3'- -CUACUAGCGGCUgaUGuuGCCGC--------------CGG- -5'
28135 3' -54.6 NC_005887.1 + 5212 0.71 0.381003
Target:  5'- aGcgGcgCGCCGACgucggGCAGCG-CGGUCa -3'
miRNA:   3'- -CuaCuaGCGGCUGa----UGUUGCcGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 5587 0.69 0.531301
Target:  5'- cGUGcgUGCCuGCUGCGGCcggugcuGCGGCCg -3'
miRNA:   3'- cUACuaGCGGcUGAUGUUGc------CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 6038 0.69 0.520513
Target:  5'- -uUGAUCGUCG-CUGCAucgcCGGaCGcGCCa -3'
miRNA:   3'- cuACUAGCGGCuGAUGUu---GCC-GC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.