miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 41588 0.68 0.564115
Target:  5'- -----cUGUCGGC--CAGCGGCGGCCc -3'
miRNA:   3'- cuacuaGCGGCUGauGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 40838 0.75 0.235662
Target:  5'- --cGAcCGCCGGCUcgGCGGCGcGCGGCg -3'
miRNA:   3'- cuaCUaGCGGCUGA--UGUUGC-CGCCGg -5'
28135 3' -54.6 NC_005887.1 + 39915 0.78 0.143788
Target:  5'- cGGUGAgcgGUCGAUugaugUGCGACGGCGGCCc -3'
miRNA:   3'- -CUACUag-CGGCUG-----AUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 39073 0.7 0.44776
Target:  5'- -----cCGUCGACUGC-GCGGUGGCa -3'
miRNA:   3'- cuacuaGCGGCUGAUGuUGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 38762 0.67 0.653461
Target:  5'- uGGUGAUCGCgaGGC-ACAACGGUGa-- -3'
miRNA:   3'- -CUACUAGCGg-CUGaUGUUGCCGCcgg -5'
28135 3' -54.6 NC_005887.1 + 38442 0.67 0.63104
Target:  5'- --aGAUCGCaaugugcaaCGA--ACGACGGCGGaCCu -3'
miRNA:   3'- cuaCUAGCG---------GCUgaUGUUGCCGCC-GG- -5'
28135 3' -54.6 NC_005887.1 + 37762 0.66 0.697967
Target:  5'- -cUGAUCGCCcccGGCgucgcuUGCAugcGgGGCGGCUg -3'
miRNA:   3'- cuACUAGCGG---CUG------AUGU---UgCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 37475 0.66 0.708957
Target:  5'- -----gCGCCGGaUGCGaucaggGCGGCGGUCa -3'
miRNA:   3'- cuacuaGCGGCUgAUGU------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 36513 0.67 0.619826
Target:  5'- --cGGUCGaCCG-CaGCAucggGCGGCGGCa -3'
miRNA:   3'- cuaCUAGC-GGCuGaUGU----UGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 36381 0.66 0.708957
Target:  5'- -cUGAUCcUCGACgacggccGCGAUGGUGGUCu -3'
miRNA:   3'- cuACUAGcGGCUGa------UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 36300 0.73 0.321229
Target:  5'- --cGGUUgGCCGAuCUGC-GCGGCGGUCg -3'
miRNA:   3'- cuaCUAG-CGGCU-GAUGuUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 36076 0.67 0.608623
Target:  5'- -----aCGCCGucgauguacaGCUGCAcguaGGCGGCCa -3'
miRNA:   3'- cuacuaGCGGC----------UGAUGUug--CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 36000 0.7 0.44776
Target:  5'- cGUGAucaUCGCCGugUGgc-CGGaCGGCCg -3'
miRNA:   3'- cUACU---AGCGGCugAUguuGCC-GCCGG- -5'
28135 3' -54.6 NC_005887.1 + 35666 0.66 0.708957
Target:  5'- -----cUGUCGACaUACAGCagcgcgcgaucGGCGGCCg -3'
miRNA:   3'- cuacuaGCGGCUG-AUGUUG-----------CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 35550 0.67 0.642255
Target:  5'- cGAUGGUCuGCuCGACaugUGCGGCGaGC-GCCg -3'
miRNA:   3'- -CUACUAG-CG-GCUG---AUGUUGC-CGcCGG- -5'
28135 3' -54.6 NC_005887.1 + 35316 0.68 0.564115
Target:  5'- -cUGcAUCGCuCcACUGCcgcgcgccGCGGCGGCCg -3'
miRNA:   3'- cuAC-UAGCG-GcUGAUGu-------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 35129 0.69 0.531301
Target:  5'- cGcgGAUCGgaauCCGGCgccACGGacgGGCGGCCg -3'
miRNA:   3'- -CuaCUAGC----GGCUGa--UGUUg--CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 34942 0.7 0.457818
Target:  5'- ---cGUCGCCGGCUuCGAacuCGGCGGgCg -3'
miRNA:   3'- cuacUAGCGGCUGAuGUU---GCCGCCgG- -5'
28135 3' -54.6 NC_005887.1 + 34685 0.69 0.531301
Target:  5'- ---cGUUGUCGAgCaGCAGCgGGCGGCCg -3'
miRNA:   3'- cuacUAGCGGCU-GaUGUUG-CCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 33889 0.68 0.585177
Target:  5'- --cGAUCGCCG-CgcCGACcugacacccgcguGGUGGCCg -3'
miRNA:   3'- cuaCUAGCGGCuGauGUUG-------------CCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.