miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 3' -54.6 NC_005887.1 + 6746 0.71 0.372023
Target:  5'- -----aUGCgGACgGCAACGGCGGUCg -3'
miRNA:   3'- cuacuaGCGgCUGaUGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 6982 0.66 0.708957
Target:  5'- -----aUGCCGAgUUGCGGgauucgcuCGGCGGCCa -3'
miRNA:   3'- cuacuaGCGGCU-GAUGUU--------GCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 7381 0.69 0.520513
Target:  5'- cGUG-UUGUCGGCgGCGACGGaCGGCg -3'
miRNA:   3'- cUACuAGCGGCUGaUGUUGCC-GCCGg -5'
28135 3' -54.6 NC_005887.1 + 8027 0.66 0.6758
Target:  5'- ---uGUCGCCGAuCUucguCAGCGcGCGGUUa -3'
miRNA:   3'- cuacUAGCGGCU-GAu---GUUGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 8948 0.69 0.487649
Target:  5'- --aGAgCGCCGAC-ACGauguaccuguuucACGGCGGCa -3'
miRNA:   3'- cuaCUaGCGGCUGaUGU-------------UGCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 9304 0.66 0.697967
Target:  5'- --cGAUCGCCGAC----GCGGCGcaguucGCUa -3'
miRNA:   3'- cuaCUAGCGGCUGauguUGCCGC------CGG- -5'
28135 3' -54.6 NC_005887.1 + 9892 0.66 0.68691
Target:  5'- --gGAUCcaGCCGG-UGCAGguCGGCGGCa -3'
miRNA:   3'- cuaCUAG--CGGCUgAUGUU--GCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 10008 0.84 0.0603
Target:  5'- --aGAUCGCCGACcACAucACGcGCGGCCg -3'
miRNA:   3'- cuaCUAGCGGCUGaUGU--UGC-CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 10354 0.73 0.283003
Target:  5'- cGUGGaCGCCGguaucACgUACAACGGCGuGCCg -3'
miRNA:   3'- cUACUaGCGGC-----UG-AUGUUGCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 12058 0.67 0.619826
Target:  5'- --aGG-CGCCGcGCUGCAGCaGGuCGGCa -3'
miRNA:   3'- cuaCUaGCGGC-UGAUGUUG-CC-GCCGg -5'
28135 3' -54.6 NC_005887.1 + 12213 0.75 0.223414
Target:  5'- --cGAUCGUCaccaaucuGGCgcGCGACGGCGGCCu -3'
miRNA:   3'- cuaCUAGCGG--------CUGa-UGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 12641 0.66 0.68691
Target:  5'- --gGGUCGgCGGacaccaUGCGcaugcCGGCGGCCg -3'
miRNA:   3'- cuaCUAGCgGCUg-----AUGUu----GCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13039 0.66 0.68025
Target:  5'- cGcgGGUCGCCGcuucggucugguauuGCUGUAGCGucGCGGCUu -3'
miRNA:   3'- -CuaCUAGCGGC---------------UGAUGUUGC--CGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13095 0.7 0.467997
Target:  5'- --cGAUCGCgGaguGCUGCAG-GGCGuGCCg -3'
miRNA:   3'- cuaCUAGCGgC---UGAUGUUgCCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 13304 0.69 0.531301
Target:  5'- --aGAUCgGCCaGGCguucgGCAACGcCGGCCg -3'
miRNA:   3'- cuaCUAG-CGG-CUGa----UGUUGCcGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13321 0.69 0.509811
Target:  5'- --cGAUCGgcaaCGAau-CGACGGCGGUCa -3'
miRNA:   3'- cuaCUAGCg---GCUgauGUUGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13390 0.7 0.428017
Target:  5'- -cUGAagGCCGGCgcgGCGGacguCGGCGGCa -3'
miRNA:   3'- cuACUagCGGCUGa--UGUU----GCCGCCGg -5'
28135 3' -54.6 NC_005887.1 + 13511 0.66 0.6758
Target:  5'- --aGGUCGCCGGCacggGCAu--GCGcGCCa -3'
miRNA:   3'- cuaCUAGCGGCUGa---UGUugcCGC-CGG- -5'
28135 3' -54.6 NC_005887.1 + 13608 0.68 0.542169
Target:  5'- ---cAUCGCUG-CUgGCAgcgcggcgcGCGGCGGCCg -3'
miRNA:   3'- cuacUAGCGGCuGA-UGU---------UGCCGCCGG- -5'
28135 3' -54.6 NC_005887.1 + 13674 0.66 0.708957
Target:  5'- --cGcgCGCCGcGCUgccaGCAGCGaugaaguacGCGGCCu -3'
miRNA:   3'- cuaCuaGCGGC-UGA----UGUUGC---------CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.