miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28135 5' -61.9 NC_005887.1 + 42144 0.66 0.323508
Target:  5'- cGCAuUCGCAGaGCaGCGgGGCGAacuGCGa -3'
miRNA:   3'- -CGUcGGCGUCaCGaCGCgCCGCU---CGC- -5'
28135 5' -61.9 NC_005887.1 + 42054 0.77 0.050167
Target:  5'- -gGGCCGCAggccGUGCUGCuGauaGGCGAGCGc -3'
miRNA:   3'- cgUCGGCGU----CACGACG-Cg--CCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 42005 0.66 0.293547
Target:  5'- uGCGGCCcacGUcgAGUGUcGcCGCGGCGcGCGa -3'
miRNA:   3'- -CGUCGG---CG--UCACGaC-GCGCCGCuCGC- -5'
28135 5' -61.9 NC_005887.1 + 41962 0.67 0.279397
Target:  5'- ----gCGUGGUGCgUGCGCGGCGcGCu -3'
miRNA:   3'- cgucgGCGUCACG-ACGCGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 41930 0.72 0.110569
Target:  5'- aGCGGCuCGCAGcugaGCUGCcCGGCGuGCu -3'
miRNA:   3'- -CGUCG-GCGUCa---CGACGcGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 41597 0.67 0.246405
Target:  5'- aGCGGCgGCccaGGUGCggcggccgGCGCGGCccGUGa -3'
miRNA:   3'- -CGUCGgCG---UCACGa-------CGCGCCGcuCGC- -5'
28135 5' -61.9 NC_005887.1 + 40750 0.66 0.315809
Target:  5'- cCAGCCGUgcgcgcgcgccaGGUGCaggaugGUGCGGCcGGUGa -3'
miRNA:   3'- cGUCGGCG------------UCACGa-----CGCGCCGcUCGC- -5'
28135 5' -61.9 NC_005887.1 + 40230 0.68 0.211148
Target:  5'- uGCcGUCGCGcaGCUcacaCGCGGCGAGCGc -3'
miRNA:   3'- -CGuCGGCGUcaCGAc---GCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 40132 0.66 0.326627
Target:  5'- aCAGCgUGCGGUgcgcGCUGCGCGccgcgcucgccgcguGUGAGCu -3'
miRNA:   3'- cGUCG-GCGUCA----CGACGCGC---------------CGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 40006 0.72 0.120121
Target:  5'- uGCAggacGUCGCGGUGCgcaucaugGCGCGGCucgaGGCGg -3'
miRNA:   3'- -CGU----CGGCGUCACGa-------CGCGCCGc---UCGC- -5'
28135 5' -61.9 NC_005887.1 + 39082 0.71 0.14546
Target:  5'- aGCaAGCCGCcGUcGaCUGCGCGGUG-GCa -3'
miRNA:   3'- -CG-UCGGCGuCA-C-GACGCGCCGCuCGc -5'
28135 5' -61.9 NC_005887.1 + 37061 0.72 0.120121
Target:  5'- aCGGCCuGCGcGUGCUcGC-CGGCGAGCu -3'
miRNA:   3'- cGUCGG-CGU-CACGA-CGcGCCGCUCGc -5'
28135 5' -61.9 NC_005887.1 + 36151 0.66 0.294269
Target:  5'- -uGGCCGCcuacGUGCagcuguacaucgacgGCGUGcGCGAGCGc -3'
miRNA:   3'- cgUCGGCGu---CACGa--------------CGCGC-CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 35545 0.67 0.259198
Target:  5'- aGC-GCCGaUGGUcuGCucgacaUGUGCGGCGAGCGc -3'
miRNA:   3'- -CGuCGGC-GUCA--CG------ACGCGCCGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 35393 0.7 0.157748
Target:  5'- cCGGCCGCcGcgGC-GCGCGGCagugGAGCGa -3'
miRNA:   3'- cGUCGGCGuCa-CGaCGCGCCG----CUCGC- -5'
28135 5' -61.9 NC_005887.1 + 34703 0.7 0.162049
Target:  5'- gGCGGCCGUcGUcGCgcuugcggUGCGCGGCGAuGUa -3'
miRNA:   3'- -CGUCGGCGuCA-CG--------ACGCGCCGCU-CGc -5'
28135 5' -61.9 NC_005887.1 + 34348 0.68 0.222391
Target:  5'- uCAGCCGCAcGgcgacgGCaUGCGCaagccGCGAGCGc -3'
miRNA:   3'- cGUCGGCGU-Ca-----CG-ACGCGc----CGCUCGC- -5'
28135 5' -61.9 NC_005887.1 + 33642 0.67 0.265795
Target:  5'- cGUAGCgCGC---GCUGCGCucGGCGAGgGu -3'
miRNA:   3'- -CGUCG-GCGucaCGACGCG--CCGCUCgC- -5'
28135 5' -61.9 NC_005887.1 + 33148 0.69 0.195203
Target:  5'- aGCAGCCGaCcGUGC--CGCGGCGGuGCu -3'
miRNA:   3'- -CGUCGGC-GuCACGacGCGCCGCU-CGc -5'
28135 5' -61.9 NC_005887.1 + 32824 0.66 0.30825
Target:  5'- cCGGCUGCAuGgcgcGCgccgGCGCGcacGCGAGCGc -3'
miRNA:   3'- cGUCGGCGU-Ca---CGa---CGCGC---CGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.