miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 5' -57.3 NC_005887.1 + 15356 1.14 0.000223
Target:  5'- cGGCCACGUUCCACGUGACGCCCGAGCa -3'
miRNA:   3'- -CCGGUGCAAGGUGCACUGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 14990 0.83 0.045493
Target:  5'- aGGCCGCGcaggCCgcagGCGUGcCGCCCGAGCu -3'
miRNA:   3'- -CCGGUGCaa--GG----UGCACuGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 31323 0.79 0.090528
Target:  5'- uGGUCACGUcCCACGUGcCGaCCGGGCc -3'
miRNA:   3'- -CCGGUGCAaGGUGCACuGCgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 15678 0.78 0.107186
Target:  5'- cGGCCGCcugCUGCGcGACGCCCGuGCg -3'
miRNA:   3'- -CCGGUGcaaGGUGCaCUGCGGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 7597 0.75 0.166607
Target:  5'- cGGUCaggaacGCGUUCaGCGUGACGCUCGGGg -3'
miRNA:   3'- -CCGG------UGCAAGgUGCACUGCGGGCUCg -5'
28136 5' -57.3 NC_005887.1 + 8505 0.72 0.241251
Target:  5'- aGUCGCGUaaCgGCGUGGCGuuCCCGGGCg -3'
miRNA:   3'- cCGGUGCAa-GgUGCACUGC--GGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 11452 0.72 0.253948
Target:  5'- cGGCCgccaGCGcUCCggcuGCGcUGACGCCCGcGCu -3'
miRNA:   3'- -CCGG----UGCaAGG----UGC-ACUGCGGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 35330 0.72 0.26719
Target:  5'- uGCCGCGcgCCGCGgcGGCcgGCCaCGAGCu -3'
miRNA:   3'- cCGGUGCaaGGUGCa-CUG--CGG-GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 923 0.71 0.280983
Target:  5'- gGGCCACGcgUCCACG-GGCaCCUuGGCu -3'
miRNA:   3'- -CCGGUGCa-AGGUGCaCUGcGGGcUCG- -5'
28136 5' -57.3 NC_005887.1 + 39950 0.71 0.280983
Target:  5'- uGGuCCACcaUUCACGUGAUGCgCGAGg -3'
miRNA:   3'- -CC-GGUGcaAGGUGCACUGCGgGCUCg -5'
28136 5' -57.3 NC_005887.1 + 4324 0.71 0.28809
Target:  5'- gGGCCGagcaGUUCagacuGCGUG-CGgCCGAGCg -3'
miRNA:   3'- -CCGGUg---CAAGg----UGCACuGCgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 27331 0.71 0.28809
Target:  5'- cGGCCACGUcgacugcgCCACGcgcagcGGCGCgcagaCGAGCg -3'
miRNA:   3'- -CCGGUGCAa-------GGUGCa-----CUGCGg----GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 6472 0.71 0.317925
Target:  5'- cGGCCAgCGccuugucgacUUCCGCGU-ACGCuUCGAGCa -3'
miRNA:   3'- -CCGGU-GC----------AAGGUGCAcUGCG-GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 12355 0.7 0.325738
Target:  5'- cGGCCAgGcggUgACGUGGCaGgCCGAGCa -3'
miRNA:   3'- -CCGGUgCaa-GgUGCACUG-CgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 13134 0.7 0.325738
Target:  5'- cGCCGCGUUCCACG-GAUcgGCCUuguacgcGGCg -3'
miRNA:   3'- cCGGUGCAAGGUGCaCUG--CGGGc------UCG- -5'
28136 5' -57.3 NC_005887.1 + 41620 0.7 0.325738
Target:  5'- cGGCgCugGcugacUUCGCGUG-CGCgCCGAGCg -3'
miRNA:   3'- -CCG-GugCa----AGGUGCACuGCG-GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 30275 0.7 0.350026
Target:  5'- aGGCCGCGacgCgGCGUGGCuGgCCG-GCg -3'
miRNA:   3'- -CCGGUGCaa-GgUGCACUG-CgGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 37682 0.69 0.366919
Target:  5'- cGGCCugGUguaUgCGCGUGACGCgcgcacugaCGAGa -3'
miRNA:   3'- -CCGGugCA---AgGUGCACUGCGg--------GCUCg -5'
28136 5' -57.3 NC_005887.1 + 27207 0.69 0.393293
Target:  5'- uGGCCGuuCGg-CCGCGUGAuCGCCgaCGAGUc -3'
miRNA:   3'- -CCGGU--GCaaGGUGCACU-GCGG--GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 25568 0.69 0.393293
Target:  5'- cGCCACccgCCGCGccauCGUCCGAGCc -3'
miRNA:   3'- cCGGUGcaaGGUGCacu-GCGGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.