miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 5' -57.3 NC_005887.1 + 923 0.71 0.280983
Target:  5'- gGGCCACGcgUCCACG-GGCaCCUuGGCu -3'
miRNA:   3'- -CCGGUGCa-AGGUGCaCUGcGGGcUCG- -5'
28136 5' -57.3 NC_005887.1 + 1312 0.66 0.552135
Target:  5'- uGCgACGuUUUCGCGUGcugaGCGCCgCGcAGCg -3'
miRNA:   3'- cCGgUGC-AAGGUGCAC----UGCGG-GC-UCG- -5'
28136 5' -57.3 NC_005887.1 + 1345 0.66 0.562838
Target:  5'- aGCCGCagg--GCGaGACGCUCGAGCg -3'
miRNA:   3'- cCGGUGcaaggUGCaCUGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 1556 0.66 0.556409
Target:  5'- cGGCCGCG--CCGCGcGAgCGCCgcacgccgucggcguCGGGCu -3'
miRNA:   3'- -CCGGUGCaaGGUGCaCU-GCGG---------------GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 4324 0.71 0.28809
Target:  5'- gGGCCGagcaGUUCagacuGCGUG-CGgCCGAGCg -3'
miRNA:   3'- -CCGGUg---CAAGg----UGCACuGCgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 6472 0.71 0.317925
Target:  5'- cGGCCAgCGccuugucgacUUCCGCGU-ACGCuUCGAGCa -3'
miRNA:   3'- -CCGGU-GC----------AAGGUGCAcUGCG-GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 7597 0.75 0.166607
Target:  5'- cGGUCaggaacGCGUUCaGCGUGACGCUCGGGg -3'
miRNA:   3'- -CCGG------UGCAAGgUGCACUGCGGGCUCg -5'
28136 5' -57.3 NC_005887.1 + 8437 0.66 0.552135
Target:  5'- cGCCgcaGCGaUCCGCGUcaacgcgaucGAgCGCCCGGcGCa -3'
miRNA:   3'- cCGG---UGCaAGGUGCA----------CU-GCGGGCU-CG- -5'
28136 5' -57.3 NC_005887.1 + 8505 0.72 0.241251
Target:  5'- aGUCGCGUaaCgGCGUGGCGuuCCCGGGCg -3'
miRNA:   3'- cCGGUGCAa-GgUGCACUGC--GGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 8565 0.68 0.429363
Target:  5'- cGCCACGccgUuacgcgacucgagCCACGUGuCGUcgCCGAGCg -3'
miRNA:   3'- cCGGUGCa--A-------------GGUGCACuGCG--GGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 8929 0.67 0.510017
Target:  5'- -uUCGCGaUCCGCGcGACGCa-GAGCg -3'
miRNA:   3'- ccGGUGCaAGGUGCaCUGCGggCUCG- -5'
28136 5' -57.3 NC_005887.1 + 10080 0.66 0.573595
Target:  5'- aGCCGCaUUCCGuCGUGugGgcggCCCGcGCc -3'
miRNA:   3'- cCGGUGcAAGGU-GCACugC----GGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 10655 0.67 0.510017
Target:  5'- gGGCCAaCGUUCgACGacaACGauCUCGAGCa -3'
miRNA:   3'- -CCGGU-GCAAGgUGCac-UGC--GGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 11082 0.68 0.430313
Target:  5'- uGCUcaaACGaUUCCGCGUGGCGCaUCG-GCu -3'
miRNA:   3'- cCGG---UGC-AAGGUGCACUGCG-GGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 11452 0.72 0.253948
Target:  5'- cGGCCgccaGCGcUCCggcuGCGcUGACGCCCGcGCu -3'
miRNA:   3'- -CCGG----UGCaAGG----UGC-ACUGCGGGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 12355 0.7 0.325738
Target:  5'- cGGCCAgGcggUgACGUGGCaGgCCGAGCa -3'
miRNA:   3'- -CCGGUgCaa-GgUGCACUG-CgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 13134 0.7 0.325738
Target:  5'- cGCCGCGUUCCACG-GAUcgGCCUuguacgcGGCg -3'
miRNA:   3'- cCGGUGCAAGGUGCaCUG--CGGGc------UCG- -5'
28136 5' -57.3 NC_005887.1 + 13533 0.66 0.537258
Target:  5'- cGCCACGaucgcgaaugcgaUCgGCGaugcgcUGcCGCCCGAGCa -3'
miRNA:   3'- cCGGUGCa------------AGgUGC------ACuGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 14545 0.67 0.530924
Target:  5'- cGGgCACGaUCUGCGcGAgGCCCGAc- -3'
miRNA:   3'- -CCgGUGCaAGGUGCaCUgCGGGCUcg -5'
28136 5' -57.3 NC_005887.1 + 14990 0.83 0.045493
Target:  5'- aGGCCGCGcaggCCgcagGCGUGcCGCCCGAGCu -3'
miRNA:   3'- -CCGGUGCaa--GG----UGCACuGCGGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.