miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 5' -57.3 NC_005887.1 + 8437 0.66 0.552135
Target:  5'- cGCCgcaGCGaUCCGCGUcaacgcgaucGAgCGCCCGGcGCa -3'
miRNA:   3'- cCGG---UGCaAGGUGCA----------CU-GCGGGCU-CG- -5'
28136 5' -57.3 NC_005887.1 + 15087 0.67 0.499692
Target:  5'- cGCCgGCGUgUCGCagaUGAUGCCCGAGa -3'
miRNA:   3'- cCGG-UGCAaGGUGc--ACUGCGGGCUCg -5'
28136 5' -57.3 NC_005887.1 + 8929 0.67 0.510017
Target:  5'- -uUCGCGaUCCGCGcGACGCa-GAGCg -3'
miRNA:   3'- ccGGUGCaAGGUGCaCUGCGggCUCG- -5'
28136 5' -57.3 NC_005887.1 + 10655 0.67 0.510017
Target:  5'- gGGCCAaCGUUCgACGacaACGauCUCGAGCa -3'
miRNA:   3'- -CCGGU-GCAAGgUGCac-UGC--GGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 34463 0.67 0.520429
Target:  5'- cGUCuuCGUUCgCGCGgcucGCGCCCGAGa -3'
miRNA:   3'- cCGGu-GCAAG-GUGCac--UGCGGGCUCg -5'
28136 5' -57.3 NC_005887.1 + 17751 0.67 0.530924
Target:  5'- cGGCCGCGcggCUGa-UGGCGCCCGGu- -3'
miRNA:   3'- -CCGGUGCaa-GGUgcACUGCGGGCUcg -5'
28136 5' -57.3 NC_005887.1 + 32540 0.67 0.535144
Target:  5'- cGGCCACGUgugccaggcuuucaCCGCGUucucGCGCCaGuGCg -3'
miRNA:   3'- -CCGGUGCAa-------------GGUGCAc---UGCGGgCuCG- -5'
28136 5' -57.3 NC_005887.1 + 13533 0.66 0.537258
Target:  5'- cGCCACGaucgcgaaugcgaUCgGCGaugcgcUGcCGCCCGAGCa -3'
miRNA:   3'- cCGGUGCa------------AGgUGC------ACuGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 34086 0.66 0.552135
Target:  5'- cGUCAcCGUUCUuccagugaGCgGUGACGC-CGAGCg -3'
miRNA:   3'- cCGGU-GCAAGG--------UG-CACUGCGgGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 24245 0.67 0.479329
Target:  5'- uGGCCACGUgccggcagcagCCACGgcgaGuCGCCgGAuaGCg -3'
miRNA:   3'- -CCGGUGCAa----------GGUGCa---CuGCGGgCU--CG- -5'
28136 5' -57.3 NC_005887.1 + 42000 0.68 0.458395
Target:  5'- cGGCCuGCGgcCCACGUcgagugucgccgcGGCGCgCGAuGCg -3'
miRNA:   3'- -CCGG-UGCaaGGUGCA-------------CUGCGgGCU-CG- -5'
28136 5' -57.3 NC_005887.1 + 18360 0.68 0.439884
Target:  5'- gGGCgAC-UUCCGCGUagacGGCGCgCCG-GCg -3'
miRNA:   3'- -CCGgUGcAAGGUGCA----CUGCG-GGCuCG- -5'
28136 5' -57.3 NC_005887.1 + 14990 0.83 0.045493
Target:  5'- aGGCCGCGcaggCCgcagGCGUGcCGCCCGAGCu -3'
miRNA:   3'- -CCGGUGCaa--GG----UGCACuGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 31323 0.79 0.090528
Target:  5'- uGGUCACGUcCCACGUGcCGaCCGGGCc -3'
miRNA:   3'- -CCGGUGCAaGGUGCACuGCgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 8505 0.72 0.241251
Target:  5'- aGUCGCGUaaCgGCGUGGCGuuCCCGGGCg -3'
miRNA:   3'- cCGGUGCAa-GgUGCACUGC--GGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 35330 0.72 0.26719
Target:  5'- uGCCGCGcgCCGCGgcGGCcgGCCaCGAGCu -3'
miRNA:   3'- cCGGUGCaaGGUGCa-CUG--CGG-GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 27331 0.71 0.28809
Target:  5'- cGGCCACGUcgacugcgCCACGcgcagcGGCGCgcagaCGAGCg -3'
miRNA:   3'- -CCGGUGCAa-------GGUGCa-----CUGCGg----GCUCG- -5'
28136 5' -57.3 NC_005887.1 + 12355 0.7 0.325738
Target:  5'- cGGCCAgGcggUgACGUGGCaGgCCGAGCa -3'
miRNA:   3'- -CCGGUgCaa-GgUGCACUG-CgGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 34528 0.68 0.420866
Target:  5'- aGGCCGCa----GCG-GAUGCCCGGGUu -3'
miRNA:   3'- -CCGGUGcaaggUGCaCUGCGGGCUCG- -5'
28136 5' -57.3 NC_005887.1 + 11082 0.68 0.430313
Target:  5'- uGCUcaaACGaUUCCGCGUGGCGCaUCG-GCu -3'
miRNA:   3'- cCGG---UGC-AAGGUGCACUGCG-GGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.