miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 36242 0.73 0.080865
Target:  5'- aCCACUUCGCCAGCUcguGCgCGGCcGUGCCu -3'
miRNA:   3'- -GGUGGGGCGGUUGG---UG-GCCG-CGCGGc -5'
28138 3' -64 NC_005887.1 + 3471 0.73 0.080865
Target:  5'- gCCGCCCUGCCAGCgGuaGcGCGCGgCGa -3'
miRNA:   3'- -GGUGGGGCGGUUGgUggC-CGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 16231 0.73 0.0831
Target:  5'- uUCGCCUcgauCGCUcGCgCACuCGGCGCGCCGg -3'
miRNA:   3'- -GGUGGG----GCGGuUG-GUG-GCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 7424 0.73 0.085394
Target:  5'- cCCGCCgCCGCCucguuuGgCGCUGGCGUGCgCGu -3'
miRNA:   3'- -GGUGG-GGCGGu-----UgGUGGCCGCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 29568 0.73 0.085394
Target:  5'- aCGCgCCCGCCGucgagGCCGCCGGCuacgacaucGUGCUGu -3'
miRNA:   3'- gGUG-GGGCGGU-----UGGUGGCCG---------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 26144 0.73 0.090164
Target:  5'- aCGCCgCGCgGGCCGCUGaCGCGCUGa -3'
miRNA:   3'- gGUGGgGCGgUUGGUGGCcGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 25014 0.73 0.090164
Target:  5'- cUCGCgCCGgCGGCCGCCGGC-CaGCCGg -3'
miRNA:   3'- -GGUGgGGCgGUUGGUGGCCGcG-CGGC- -5'
28138 3' -64 NC_005887.1 + 5142 0.73 0.090164
Target:  5'- aCCGCgCUGCCcgaCGUCGGCGCGCCGc -3'
miRNA:   3'- -GGUGgGGCGGuugGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 5238 0.72 0.092392
Target:  5'- aCACCUCgacgcguGCCAucagcAUCAgCGGCGCGCCGa -3'
miRNA:   3'- gGUGGGG-------CGGU-----UGGUgGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 9698 0.72 0.092643
Target:  5'- aCACCgacaUCGCgAGCCACCGGuCGCGCa- -3'
miRNA:   3'- gGUGG----GGCGgUUGGUGGCC-GCGCGgc -5'
28138 3' -64 NC_005887.1 + 18449 0.72 0.092643
Target:  5'- gCCAUCggguUCGCgAG-CGCCGGCGCGCCGu -3'
miRNA:   3'- -GGUGG----GGCGgUUgGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 32285 0.72 0.092643
Target:  5'- uCCACacggggcgaUCGUCgGGCCAgCCGGCGCGCCGc -3'
miRNA:   3'- -GGUGg--------GGCGG-UUGGU-GGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31469 0.72 0.094929
Target:  5'- cCUACCCCGCUGaaccacggcacgcACCgcuaGCCGaGCGCGUCGa -3'
miRNA:   3'- -GGUGGGGCGGU-------------UGG----UGGC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 42210 0.72 0.095186
Target:  5'- uUCGCCCCGCUGcUCugCGaauGCGCGCCa -3'
miRNA:   3'- -GGUGGGGCGGUuGGugGC---CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 35750 0.72 0.097795
Target:  5'- aCCGCgaaGCCGGCCGCCGaucGCGCGCUGc -3'
miRNA:   3'- -GGUGgggCGGUUGGUGGC---CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 4623 0.72 0.100472
Target:  5'- gCCGCggCGCCGgugGCCGCCGGCGCGaUCa -3'
miRNA:   3'- -GGUGggGCGGU---UGGUGGCCGCGC-GGc -5'
28138 3' -64 NC_005887.1 + 7177 0.72 0.103218
Target:  5'- gCCGCCCCGCCucguuaGACCAcgcgcgauuCCGuguucaggaGCGCGUCGg -3'
miRNA:   3'- -GGUGGGGCGG------UUGGU---------GGC---------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 18110 0.72 0.103218
Target:  5'- aUCGCCCaauCGUCGGCCGucaguCCGGCGCGCg- -3'
miRNA:   3'- -GGUGGG---GCGGUUGGU-----GGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 28572 0.72 0.103218
Target:  5'- aCCGCaUCGUCAucuucCCGCCGGCGCGCg- -3'
miRNA:   3'- -GGUGgGGCGGUu----GGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 9337 0.72 0.105749
Target:  5'- gUCGCCgUGCCGACCGCCGugcacagauagacGCGauCGCCGa -3'
miRNA:   3'- -GGUGGgGCGGUUGGUGGC-------------CGC--GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.