miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 16140 1.1 0.000105
Target:  5'- aCCACCCCGCCAACCACCGGCGCGCCGa -3'
miRNA:   3'- -GGUGGGGCGGUUGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 14014 0.87 0.006865
Target:  5'- gCGCCuCCG-CAACCGCCGGCGCGCCGc -3'
miRNA:   3'- gGUGG-GGCgGUUGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 34616 0.81 0.019389
Target:  5'- cCUugCCCGCCAGCCauucGCCguucgcgucgacgaGGCGCGCCGg -3'
miRNA:   3'- -GGugGGGCGGUUGG----UGG--------------CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40740 0.8 0.025908
Target:  5'- gCCGCCCgCGUCGaggcgaucGCCGuuGGCGCGCCGc -3'
miRNA:   3'- -GGUGGG-GCGGU--------UGGUggCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 31394 0.79 0.027175
Target:  5'- aCgGCCCgGUCGgcacgugggacgugACCACCGGUGCGCCGa -3'
miRNA:   3'- -GgUGGGgCGGU--------------UGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 11962 0.79 0.028986
Target:  5'- -aGCCCCGCCGugaaGuuGCCGGCGCuGCCGa -3'
miRNA:   3'- ggUGGGGCGGU----UggUGGCCGCG-CGGC- -5'
28138 3' -64 NC_005887.1 + 14701 0.78 0.035263
Target:  5'- gCACCgCGCCGGCUGCCGugaGCGCGCCc -3'
miRNA:   3'- gGUGGgGCGGUUGGUGGC---CGCGCGGc -5'
28138 3' -64 NC_005887.1 + 33825 0.77 0.04275
Target:  5'- aCGCCgCGCCAgauGCUcgugaagGCCGGCGCGCUGa -3'
miRNA:   3'- gGUGGgGCGGU---UGG-------UGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 23448 0.77 0.044079
Target:  5'- gCCAUCCCGCCGcuuccaccggaaGCCcggcaGCCGGCGaCGCCc -3'
miRNA:   3'- -GGUGGGGCGGU------------UGG-----UGGCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 4692 0.76 0.052071
Target:  5'- aUCGCgCCGgCGGCCACCGGCGcCGCgGc -3'
miRNA:   3'- -GGUGgGGCgGUUGGUGGCCGC-GCGgC- -5'
28138 3' -64 NC_005887.1 + 4471 0.75 0.055036
Target:  5'- aUCGCCgCGCCu-UCGCCGGCGCGCa- -3'
miRNA:   3'- -GGUGGgGCGGuuGGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 23315 0.75 0.059792
Target:  5'- gCGCCUuuugcgCGCCGACCGCCGccgcucGCGUGCCGu -3'
miRNA:   3'- gGUGGG------GCGGUUGGUGGC------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 5464 0.75 0.059792
Target:  5'- gCCG-CCCGCCggUuCACCGGuCGCGCUGg -3'
miRNA:   3'- -GGUgGGGCGGuuG-GUGGCC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 9490 0.75 0.061465
Target:  5'- aCgACCCgGCCGACC-CCGGCauGCuGCCGa -3'
miRNA:   3'- -GgUGGGgCGGUUGGuGGCCG--CG-CGGC- -5'
28138 3' -64 NC_005887.1 + 32784 0.75 0.064589
Target:  5'- gCUACCCCGCCGugggugaACCGCgCGGCuauccguGCGCUGu -3'
miRNA:   3'- -GGUGGGGCGGU-------UGGUG-GCCG-------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 40852 0.75 0.064767
Target:  5'- gCCGCCacgaaccucgaCCGCCGGCUcggcggcGCgCGGCGCGCCa -3'
miRNA:   3'- -GGUGG-----------GGCGGUUGG-------UG-GCCGCGCGGc -5'
28138 3' -64 NC_005887.1 + 31784 0.74 0.070526
Target:  5'- cCCACCCUGCgAGCCAgUGGUcUGCCGc -3'
miRNA:   3'- -GGUGGGGCGgUUGGUgGCCGcGCGGC- -5'
28138 3' -64 NC_005887.1 + 28650 0.74 0.07594
Target:  5'- cCUACCUCGUCGACCGCguccgcgcagcgggCGGCGaCGCCu -3'
miRNA:   3'- -GGUGGGGCGGUUGGUG--------------GCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 11456 0.74 0.076566
Target:  5'- gCGCCggCCGCCAGCgCuCCGGCuGCGCUGa -3'
miRNA:   3'- gGUGG--GGCGGUUG-GuGGCCG-CGCGGC- -5'
28138 3' -64 NC_005887.1 + 25084 0.73 0.078687
Target:  5'- aCCGgCUgGCCGgcgGCCGCCGGCGCgaGCUGa -3'
miRNA:   3'- -GGUgGGgCGGU---UGGUGGCCGCG--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.