miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 14778 0.71 0.122528
Target:  5'- aCCACCUCGCCGACCagaucaacccgcuggACCcgaucaaucuGGCG-GCCGc -3'
miRNA:   3'- -GGUGGGGCGGUUGG---------------UGG----------CCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 4623 0.72 0.100472
Target:  5'- gCCGCggCGCCGgugGCCGCCGGCGCGaUCa -3'
miRNA:   3'- -GGUGggGCGGU---UGGUGGCCGCGC-GGc -5'
28138 3' -64 NC_005887.1 + 982 0.72 0.108923
Target:  5'- aUCGCCgacacgcgcaaUUGCCGGCCGCCGuGCGCGCg- -3'
miRNA:   3'- -GGUGG-----------GGCGGUUGGUGGC-CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 14680 0.71 0.111885
Target:  5'- gCUGCCCCGCaCGAUCgggcucgucgcgGCgGGCGgGCCGg -3'
miRNA:   3'- -GGUGGGGCG-GUUGG------------UGgCCGCgCGGC- -5'
28138 3' -64 NC_005887.1 + 4513 0.71 0.114922
Target:  5'- gUCugCUCGCCGACUACggCGGCGUcCCGg -3'
miRNA:   3'- -GGugGGGCGGUUGGUG--GCCGCGcGGC- -5'
28138 3' -64 NC_005887.1 + 14975 0.71 0.117094
Target:  5'- aCGCCUaCGCCGcgcaggccgcgcagGCCGCaGGCGUGCCGc -3'
miRNA:   3'- gGUGGG-GCGGU--------------UGGUGgCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 39784 0.71 0.118036
Target:  5'- gCGCUCgCGCCGAUCGuuGcGCGCGUCGu -3'
miRNA:   3'- gGUGGG-GCGGUUGGUggC-CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 2923 0.71 0.118036
Target:  5'- aCGCCgCCGCCAAgCugCGcaaGCGCCGc -3'
miRNA:   3'- gGUGG-GGCGGUUgGugGCcg-CGCGGC- -5'
28138 3' -64 NC_005887.1 + 15691 0.71 0.121229
Target:  5'- aCCGCCgCGCgGccggaugauuccGCCGCCGGCGUGaaGg -3'
miRNA:   3'- -GGUGGgGCGgU------------UGGUGGCCGCGCggC- -5'
28138 3' -64 NC_005887.1 + 32285 0.72 0.092643
Target:  5'- uCCACacggggcgaUCGUCgGGCCAgCCGGCGCGCCGc -3'
miRNA:   3'- -GGUGg--------GGCGG-UUGGU-GGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 5142 0.73 0.090164
Target:  5'- aCCGCgCUGCCcgaCGUCGGCGCGCCGc -3'
miRNA:   3'- -GGUGgGGCGGuugGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 25014 0.73 0.090164
Target:  5'- cUCGCgCCGgCGGCCGCCGGC-CaGCCGg -3'
miRNA:   3'- -GGUGgGGCgGUUGGUGGCCGcG-CGGC- -5'
28138 3' -64 NC_005887.1 + 14014 0.87 0.006865
Target:  5'- gCGCCuCCG-CAACCGCCGGCGCGCCGc -3'
miRNA:   3'- gGUGG-GGCgGUUGGUGGCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 34616 0.81 0.019389
Target:  5'- cCUugCCCGCCAGCCauucGCCguucgcgucgacgaGGCGCGCCGg -3'
miRNA:   3'- -GGugGGGCGGUUGG----UGG--------------CCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 40740 0.8 0.025908
Target:  5'- gCCGCCCgCGUCGaggcgaucGCCGuuGGCGCGCCGc -3'
miRNA:   3'- -GGUGGG-GCGGU--------UGGUggCCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 23448 0.77 0.044079
Target:  5'- gCCAUCCCGCCGcuuccaccggaaGCCcggcaGCCGGCGaCGCCc -3'
miRNA:   3'- -GGUGGGGCGGU------------UGG-----UGGCCGC-GCGGc -5'
28138 3' -64 NC_005887.1 + 9490 0.75 0.061465
Target:  5'- aCgACCCgGCCGACC-CCGGCauGCuGCCGa -3'
miRNA:   3'- -GgUGGGgCGGUUGGuGGCCG--CG-CGGC- -5'
28138 3' -64 NC_005887.1 + 31784 0.74 0.070526
Target:  5'- cCCACCCUGCgAGCCAgUGGUcUGCCGc -3'
miRNA:   3'- -GGUGGGGCGgUUGGUgGCCGcGCGGC- -5'
28138 3' -64 NC_005887.1 + 36242 0.73 0.080865
Target:  5'- aCCACUUCGCCAGCUcguGCgCGGCcGUGCCu -3'
miRNA:   3'- -GGUGGGGCGGUUGG---UG-GCCG-CGCGGc -5'
28138 3' -64 NC_005887.1 + 7424 0.73 0.085394
Target:  5'- cCCGCCgCCGCCucguuuGgCGCUGGCGUGCgCGu -3'
miRNA:   3'- -GGUGG-GGCGGu-----UgGUGGCCGCGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.