miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28138 3' -64 NC_005887.1 + 533 0.69 0.179677
Target:  5'- ---aCgCGUCGGCCGCC-GCGCGCCGc -3'
miRNA:   3'- ggugGgGCGGUUGGUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 631 0.68 0.207802
Target:  5'- cCCAUCUgGCCGGCgGucuucgcgcuguauCCGGCGCGgCGc -3'
miRNA:   3'- -GGUGGGgCGGUUGgU--------------GGCCGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 982 0.72 0.108923
Target:  5'- aUCGCCgacacgcgcaaUUGCCGGCCGCCGuGCGCGCg- -3'
miRNA:   3'- -GGUGG-----------GGCGGUUGGUGGC-CGCGCGgc -5'
28138 3' -64 NC_005887.1 + 1474 0.66 0.259891
Target:  5'- -aGCCCgaCGCCGACgGCgugcggcgcucgcgCGGCGCgGCCGu -3'
miRNA:   3'- ggUGGG--GCGGUUGgUG--------------GCCGCG-CGGC- -5'
28138 3' -64 NC_005887.1 + 1645 0.67 0.243229
Target:  5'- gCCGCCaC-CCAcCCACCGGCccagguCGCCGa -3'
miRNA:   3'- -GGUGGgGcGGUuGGUGGCCGc-----GCGGC- -5'
28138 3' -64 NC_005887.1 + 1786 0.68 0.208855
Target:  5'- aCCugCgCGUCGGCCGCUacccgaaGGaCGUGCCGc -3'
miRNA:   3'- -GGugGgGCGGUUGGUGG-------CC-GCGCGGC- -5'
28138 3' -64 NC_005887.1 + 2003 0.68 0.209383
Target:  5'- cCCACCgaUCGCCGucacgcaugacGCCGcCCGGC-UGCCGa -3'
miRNA:   3'- -GGUGG--GGCGGU-----------UGGU-GGCCGcGCGGC- -5'
28138 3' -64 NC_005887.1 + 2252 0.69 0.166271
Target:  5'- gCugCCCGaUCAccGCgGCCGGCGUcagGCCGa -3'
miRNA:   3'- gGugGGGC-GGU--UGgUGGCCGCG---CGGC- -5'
28138 3' -64 NC_005887.1 + 2398 0.7 0.132693
Target:  5'- -gAUCCUGCguGCCGCUGGCuucgaggcgaagcccGCGCCGa -3'
miRNA:   3'- ggUGGGGCGguUGGUGGCCG---------------CGCGGC- -5'
28138 3' -64 NC_005887.1 + 2445 0.66 0.288331
Target:  5'- aCACCUCGCUGcGCUA-CGGCGcCGUCGa -3'
miRNA:   3'- gGUGGGGCGGU-UGGUgGCCGC-GCGGC- -5'
28138 3' -64 NC_005887.1 + 2521 0.69 0.166271
Target:  5'- gCGCCUCGUCGACggCGCCGuaGCGCgCGa -3'
miRNA:   3'- gGUGGGGCGGUUG--GUGGCcgCGCG-GC- -5'
28138 3' -64 NC_005887.1 + 2923 0.71 0.118036
Target:  5'- aCGCCgCCGCCAAgCugCGcaaGCGCCGc -3'
miRNA:   3'- gGUGG-GGCGGUUgGugGCcg-CGCGGC- -5'
28138 3' -64 NC_005887.1 + 2982 0.68 0.206231
Target:  5'- uCCACguccgucguucuucgUCCGUCAacgcGCCugCGGCcaGCGCCGc -3'
miRNA:   3'- -GGUG---------------GGGCGGU----UGGugGCCG--CGCGGC- -5'
28138 3' -64 NC_005887.1 + 3075 0.69 0.162005
Target:  5'- cCCGCggCGCUGGCCGCaGGCGCGuuGa -3'
miRNA:   3'- -GGUGggGCGGUUGGUGgCCGCGCggC- -5'
28138 3' -64 NC_005887.1 + 3471 0.73 0.080865
Target:  5'- gCCGCCCUGCCAGCgGuaGcGCGCGgCGa -3'
miRNA:   3'- -GGUGGGGCGGUUGgUggC-CGCGCgGC- -5'
28138 3' -64 NC_005887.1 + 3704 0.7 0.134817
Target:  5'- aCCACgCCGUCGA--GCC-GCGCGCCGa -3'
miRNA:   3'- -GGUGgGGCGGUUggUGGcCGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 4111 0.7 0.142126
Target:  5'- aCCAuuuCCUCGCCcuugucguucaGGCCACCccaauucaGCGCGCCGg -3'
miRNA:   3'- -GGU---GGGGCGG-----------UUGGUGGc-------CGCGCGGC- -5'
28138 3' -64 NC_005887.1 + 4311 0.66 0.26824
Target:  5'- gCCGaggCCgGCCAGCUGCCGGaCaUGCCGc -3'
miRNA:   3'- -GGUg--GGgCGGUUGGUGGCC-GcGCGGC- -5'
28138 3' -64 NC_005887.1 + 4471 0.75 0.055036
Target:  5'- aUCGCCgCGCCu-UCGCCGGCGCGCa- -3'
miRNA:   3'- -GGUGGgGCGGuuGGUGGCCGCGCGgc -5'
28138 3' -64 NC_005887.1 + 4513 0.71 0.114922
Target:  5'- gUCugCUCGCCGACUACggCGGCGUcCCGg -3'
miRNA:   3'- -GGugGGGCGGUUGGUG--GCCGCGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.