miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28140 5' -53.6 NC_005887.1 + 18224 0.66 0.743617
Target:  5'- --aUGCCGAGCAGcuUCGGcacgacgucGGCGGCCc -3'
miRNA:   3'- uuaGCGGUUCGUCu-AGCU---------CUGCUGGc -5'
28140 5' -53.6 NC_005887.1 + 9304 0.66 0.743617
Target:  5'- cGAUCGCCGAcgcggcGCAGuUCGcuAgGACCGa -3'
miRNA:   3'- -UUAGCGGUU------CGUCuAGCucUgCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 7493 0.66 0.743617
Target:  5'- --aCGCCAgcccaaacgaGGCGGcggCGGGuGCGACCGu -3'
miRNA:   3'- uuaGCGGU----------UCGUCua-GCUC-UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 17060 0.66 0.743617
Target:  5'- --gCGCguGGCGGAUCGGcACGuaGCCGu -3'
miRNA:   3'- uuaGCGguUCGUCUAGCUcUGC--UGGC- -5'
28140 5' -53.6 NC_005887.1 + 40195 0.66 0.732742
Target:  5'- gAAUCGCCGccGGcCAGGUCGAGGuCuucCCGa -3'
miRNA:   3'- -UUAGCGGU--UC-GUCUAGCUCU-Gcu-GGC- -5'
28140 5' -53.6 NC_005887.1 + 31341 0.66 0.732742
Target:  5'- -cUCGaCgAGGC-GAUCGAcGCGGCCGa -3'
miRNA:   3'- uuAGC-GgUUCGuCUAGCUcUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 5124 0.66 0.721759
Target:  5'- -cUCGCCAAGC---UCGGcAUGACCGc -3'
miRNA:   3'- uuAGCGGUUCGucuAGCUcUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 27345 0.66 0.721759
Target:  5'- --gCGCCAcgcgcAGCGGcgCGcAGACGAgCGu -3'
miRNA:   3'- uuaGCGGU-----UCGUCuaGC-UCUGCUgGC- -5'
28140 5' -53.6 NC_005887.1 + 30678 0.66 0.71068
Target:  5'- --aUGUCGGGCAGAUCGAccucguacucGGCGAgCa -3'
miRNA:   3'- uuaGCGGUUCGUCUAGCU----------CUGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 15787 0.66 0.71068
Target:  5'- --gCGCagAAGCAGAUCGAuGCGGCa- -3'
miRNA:   3'- uuaGCGg-UUCGUCUAGCUcUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 17814 0.66 0.71068
Target:  5'- uGAUCGCCGAGUcGcUCGAGcACGGgCu -3'
miRNA:   3'- -UUAGCGGUUCGuCuAGCUC-UGCUgGc -5'
28140 5' -53.6 NC_005887.1 + 973 0.66 0.71068
Target:  5'- gGGUCGCgAcGCGGAUCGAaGCcgaGGCCGc -3'
miRNA:   3'- -UUAGCGgUuCGUCUAGCUcUG---CUGGC- -5'
28140 5' -53.6 NC_005887.1 + 21558 0.66 0.699518
Target:  5'- cGAUUGCCGgcGGCgaugcgagauAGGUCGAGAaaccCGACCc -3'
miRNA:   3'- -UUAGCGGU--UCG----------UCUAGCUCU----GCUGGc -5'
28140 5' -53.6 NC_005887.1 + 5283 0.66 0.699518
Target:  5'- cAGUCGcCCGAGCAGcgCGcGGCGAa-- -3'
miRNA:   3'- -UUAGC-GGUUCGUCuaGCuCUGCUggc -5'
28140 5' -53.6 NC_005887.1 + 26395 0.66 0.688286
Target:  5'- gGAUCGUCugcgGGUucuGGUCGAGcugGCGGCCGc -3'
miRNA:   3'- -UUAGCGGu---UCGu--CUAGCUC---UGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 4518 0.67 0.675865
Target:  5'- -cUCGCCGacuacGGCGGcgucccgGUCGAGGCGAUg- -3'
miRNA:   3'- uuAGCGGU-----UCGUC-------UAGCUCUGCUGgc -5'
28140 5' -53.6 NC_005887.1 + 15587 0.67 0.665661
Target:  5'- uGAUCGCCGAagcugagacGCAGcgcacgggcGUCGcgcagcAGGCGGCCGg -3'
miRNA:   3'- -UUAGCGGUU---------CGUC---------UAGC------UCUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 4938 0.67 0.665661
Target:  5'- cAUCGUCGcgAGCGGAUCGAu-CGugCGc -3'
miRNA:   3'- uUAGCGGU--UCGUCUAGCUcuGCugGC- -5'
28140 5' -53.6 NC_005887.1 + 24997 0.67 0.654292
Target:  5'- uAGUUGCCGAGCgucAGcUCGcgccGGCGGCCGc -3'
miRNA:   3'- -UUAGCGGUUCG---UCuAGCu---CUGCUGGC- -5'
28140 5' -53.6 NC_005887.1 + 759 0.67 0.654292
Target:  5'- cGUCGgCGAGCAGcAUCGAcucGGCGAgCa -3'
miRNA:   3'- uUAGCgGUUCGUC-UAGCU---CUGCUgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.