Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28141 | 3' | -59.4 | NC_005887.1 | + | 35333 | 0.7 | 0.225587 |
Target: 5'- cGCGCGCCGCGgcgGCcgGCcacgaGCUUCaCGCc -3' miRNA: 3'- cCGCGUGGCGCa--CGa-CG-----UGAAG-GCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 11609 | 0.7 | 0.225587 |
Target: 5'- cGCGCGCUGCGcgccgagcUGCUGaucaGCUUgaCCGCGu -3' miRNA: 3'- cCGCGUGGCGC--------ACGACg---UGAA--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 16937 | 0.7 | 0.225587 |
Target: 5'- gGGCGCGauGCGUGa-GCGCUUcaaCCGCGc -3' miRNA: 3'- -CCGCGUggCGCACgaCGUGAA---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 22415 | 0.7 | 0.231517 |
Target: 5'- cGCGaACCucguCGUGCUGCugUUCUGCa -3' miRNA: 3'- cCGCgUGGc---GCACGACGugAAGGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 8915 | 0.7 | 0.237578 |
Target: 5'- gGGCGCGCCgGCGUucacaaGCUGC----CCGCGa -3' miRNA: 3'- -CCGCGUGG-CGCA------CGACGugaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 2094 | 0.7 | 0.243771 |
Target: 5'- cGGUGCACCcggacuauGCGgauucGCUGCACUgcaagCCGUu -3' miRNA: 3'- -CCGCGUGG--------CGCa----CGACGUGAa----GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 8702 | 0.7 | 0.243771 |
Target: 5'- cGGCGaucCGCCGCG-GCgguaaGCGCUUCguCGCGg -3' miRNA: 3'- -CCGC---GUGGCGCaCGa----CGUGAAG--GCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 368 | 0.7 | 0.243771 |
Target: 5'- cGCGCACCGCGgccucGCUgaucacgccacGCAgUUcCCGCGc -3' miRNA: 3'- cCGCGUGGCGCa----CGA-----------CGUgAA-GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 12198 | 0.7 | 0.249459 |
Target: 5'- uGGCGCGCgacgGCGgccUGCUcguccugGCGCUUCUGCGc -3' miRNA: 3'- -CCGCGUGg---CGC---ACGA-------CGUGAAGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 13625 | 0.7 | 0.250098 |
Target: 5'- cGGCGCGCgGCG-GCcGCACUcagCCGa- -3' miRNA: 3'- -CCGCGUGgCGCaCGaCGUGAa--GGCgc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 41952 | 0.7 | 0.250098 |
Target: 5'- cGGCGUGCuCGCGUGgUGCG--UgCGCGg -3' miRNA: 3'- -CCGCGUG-GCGCACgACGUgaAgGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 40580 | 0.7 | 0.256559 |
Target: 5'- cGCGCGCCGCGUGgUGgaugccgaaCACgacgUCGCGc -3' miRNA: 3'- cCGCGUGGCGCACgAC---------GUGaa--GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 471 | 0.7 | 0.256559 |
Target: 5'- cGGCGCGgCGCGUcuucGCgGCGCUUgcCCGUc -3' miRNA: 3'- -CCGCGUgGCGCA----CGaCGUGAA--GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 15687 | 0.7 | 0.256559 |
Target: 5'- cGGCGagcccgGCCGCcUGCUGCGCgacgcCCGUGc -3' miRNA: 3'- -CCGCg-----UGGCGcACGACGUGaa---GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 24956 | 0.69 | 0.263157 |
Target: 5'- cGCGgGCCGCcuUGC-GCGCggCCGCGa -3' miRNA: 3'- cCGCgUGGCGc-ACGaCGUGaaGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 32745 | 0.69 | 0.263157 |
Target: 5'- cGGCGC-UCGCGUGC-GCGCcggCgCGCGc -3' miRNA: 3'- -CCGCGuGGCGCACGaCGUGaa-G-GCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 14029 | 0.69 | 0.269892 |
Target: 5'- aGGUGCACCGUGaccgGC-GCGCccgucuugUCCGUGa -3' miRNA: 3'- -CCGCGUGGCGCa---CGaCGUGa-------AGGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 5434 | 0.69 | 0.269892 |
Target: 5'- cGGCGCgaccacGCCGCccGCUgGCACUccugCCGCa -3' miRNA: 3'- -CCGCG------UGGCGcaCGA-CGUGAa---GGCGc -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 27232 | 0.69 | 0.276071 |
Target: 5'- gGGCGCAUCGCGgcgcaacUGCaucGCGCgccggcCCGCGu -3' miRNA: 3'- -CCGCGUGGCGC-------ACGa--CGUGaa----GGCGC- -5' |
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28141 | 3' | -59.4 | NC_005887.1 | + | 42083 | 0.69 | 0.276765 |
Target: 5'- aGCGCugUcGCGUGggGCGCgaugCCGCGu -3' miRNA: 3'- cCGCGugG-CGCACgaCGUGaa--GGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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