miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 8167 0.69 0.511961
Target:  5'- cUCGGCGaGCGcGGCGAGcuGCG-CGCg -3'
miRNA:   3'- cAGCCGC-CGUaCCGCUUcuUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 18549 0.69 0.5271
Target:  5'- gGUgGGCGGCGgcgccggcuucgcgGGCGAcauGcuCGUCGCg -3'
miRNA:   3'- -CAgCCGCCGUa-------------CCGCUu--CuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 29503 0.69 0.53364
Target:  5'- -cCGGCGGCcucgacGGCGGgcgcguuguAGAACAgcacgUCGCg -3'
miRNA:   3'- caGCCGCCGua----CCGCU---------UCUUGU-----AGCG- -5'
28142 3' -54.3 NC_005887.1 + 6590 0.69 0.538016
Target:  5'- uUCGGCGGg--GGCGAugccgucauugccguAGAACAgcgucugCGCa -3'
miRNA:   3'- cAGCCGCCguaCCGCU---------------UCUUGUa------GCG- -5'
28142 3' -54.3 NC_005887.1 + 16201 0.68 0.544603
Target:  5'- -cCGGUGGU-UGGCG-GGGugGUUGCg -3'
miRNA:   3'- caGCCGCCGuACCGCuUCUugUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 22147 0.68 0.544603
Target:  5'- cUCGGCuuCAUcGGCGAAGGGCugacgCGCa -3'
miRNA:   3'- cAGCCGccGUA-CCGCUUCUUGua---GCG- -5'
28142 3' -54.3 NC_005887.1 + 21262 0.68 0.55232
Target:  5'- cUCGGgGGCAccgcGGCGgcGGcguaugcgcugcugGCGUCGCc -3'
miRNA:   3'- cAGCCgCCGUa---CCGCuuCU--------------UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 17909 0.68 0.577891
Target:  5'- uUCGGCGGCGUcacaGGUuGGAcGGACG-CGCu -3'
miRNA:   3'- cAGCCGCCGUA----CCG-CUU-CUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 40788 0.68 0.577891
Target:  5'- -cCGGCGGUcgagguucGUGGCGgcGAcGCGcCGCu -3'
miRNA:   3'- caGCCGCCG--------UACCGCuuCU-UGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 41622 0.68 0.589093
Target:  5'- cUCGGCGcuggcugacuucGCGUGcGCGccGAGCGccUCGCg -3'
miRNA:   3'- cAGCCGC------------CGUAC-CGCuuCUUGU--AGCG- -5'
28142 3' -54.3 NC_005887.1 + 30701 0.68 0.589093
Target:  5'- cUCGGCGaGCAggUGcGCGAGcAGCuuGUCGCg -3'
miRNA:   3'- cAGCCGC-CGU--AC-CGCUUcUUG--UAGCG- -5'
28142 3' -54.3 NC_005887.1 + 28594 0.68 0.589093
Target:  5'- -cCGGCGcGCGUGaGCGugccuGAccGCAUCGUc -3'
miRNA:   3'- caGCCGC-CGUAC-CGCuu---CU--UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 28216 0.67 0.600333
Target:  5'- aGUCGGCGuGCGaGGUGuuGcAgGUCGCc -3'
miRNA:   3'- -CAGCCGC-CGUaCCGCuuCuUgUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 2219 0.67 0.611601
Target:  5'- aUgGGCGGC-UGGCGcauccggucGGAAguCGUCGCg -3'
miRNA:   3'- cAgCCGCCGuACCGCu--------UCUU--GUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 7565 0.67 0.611601
Target:  5'- -cCGGCcucguGGCA-GGCGuauccGGAcgGCAUCGCg -3'
miRNA:   3'- caGCCG-----CCGUaCCGCu----UCU--UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 5933 0.67 0.611601
Target:  5'- uUCGGUGuGUcgGGCG-AGGugAUCGa -3'
miRNA:   3'- cAGCCGC-CGuaCCGCuUCUugUAGCg -5'
28142 3' -54.3 NC_005887.1 + 30472 0.67 0.611601
Target:  5'- gGUgGGCgaacucGGCGUGGCGAAGuuuucagaGGCGaCGCc -3'
miRNA:   3'- -CAgCCG------CCGUACCGCUUC--------UUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 2839 0.67 0.611601
Target:  5'- --gGuGUGGCGUGGCGcAGGAUAgUGCg -3'
miRNA:   3'- cagC-CGCCGUACCGCuUCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 23254 0.67 0.611601
Target:  5'- gGUCGGCGcGCAaaaGGCGcAGcuCGUgGCg -3'
miRNA:   3'- -CAGCCGC-CGUa--CCGCuUCuuGUAgCG- -5'
28142 3' -54.3 NC_005887.1 + 15206 0.67 0.622889
Target:  5'- -aCGGCGGCAaccuGCaGgcGAugAUCGCc -3'
miRNA:   3'- caGCCGCCGUac--CG-CuuCUugUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.