Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28142 | 3' | -54.3 | NC_005887.1 | + | 17413 | 1.13 | 0.00048 |
Target: 5'- cGUCGGCGGCAUGGCGAAGAACAUCGCg -3' miRNA: 3'- -CAGCCGCCGUACCGCUUCUUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 19323 | 0.76 | 0.199604 |
Target: 5'- cGUCGGCGGCAccaaGCGGuacagguGGAGCAUCGa -3' miRNA: 3'- -CAGCCGCCGUac--CGCU-------UCUUGUAGCg -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 15163 | 0.74 | 0.283165 |
Target: 5'- cUCGaCGGCAUGGCGAAGuACcUgGCg -3' miRNA: 3'- cAGCcGCCGUACCGCUUCuUGuAgCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 18442 | 0.73 | 0.290569 |
Target: 5'- aUCGGCGcgaucucgacGCA-GGCGAAGAACcugcUCGCg -3' miRNA: 3'- cAGCCGC----------CGUaCCGCUUCUUGu---AGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 18948 | 0.73 | 0.305829 |
Target: 5'- cGUCGGCGGCcaauacgcacgAUucuGCGAAGGGCA-CGCg -3' miRNA: 3'- -CAGCCGCCG-----------UAc--CGCUUCUUGUaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 3771 | 0.73 | 0.321695 |
Target: 5'- gGUCGGCGcGCGgcucgacGGCGugguAGAAgAUCGCc -3' miRNA: 3'- -CAGCCGC-CGUa------CCGCu---UCUUgUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 13410 | 0.72 | 0.338169 |
Target: 5'- cGUCGGCGGCAagccgcugcUGaCGAcGAGCggCGCa -3' miRNA: 3'- -CAGCCGCCGU---------ACcGCUuCUUGuaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 13626 | 0.71 | 0.381985 |
Target: 5'- cGUCGGCcuGCucgGGCGGcAGcGCAUCGCc -3' miRNA: 3'- -CAGCCGc-CGua-CCGCU-UCuUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 5372 | 0.71 | 0.39119 |
Target: 5'- cGUCGG-GGUGuUGGCGuAGAACuUCGCc -3' miRNA: 3'- -CAGCCgCCGU-ACCGCuUCUUGuAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 3916 | 0.71 | 0.39119 |
Target: 5'- -aUGGCGaacgaCAUGGCGAAGAccaACAUcCGCg -3' miRNA: 3'- caGCCGCc----GUACCGCUUCU---UGUA-GCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 16578 | 0.7 | 0.429423 |
Target: 5'- -cCGGCGGCGacGCGAucGGccugcGACAUCGCc -3' miRNA: 3'- caGCCGCCGUacCGCU--UC-----UUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 30957 | 0.7 | 0.429423 |
Target: 5'- uGUCGGCGcccGCGUacGUGAGGAACuUCGCc -3' miRNA: 3'- -CAGCCGC---CGUAc-CGCUUCUUGuAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 4528 | 0.7 | 0.429423 |
Target: 5'- -aCGGCGGCGUcccggucgaGGCGAuGAGCAcCGa -3' miRNA: 3'- caGCCGCCGUA---------CCGCUuCUUGUaGCg -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 5826 | 0.7 | 0.43932 |
Target: 5'- aGUCGGCGcGgGUcGCGAAGGGCGaaGCg -3' miRNA: 3'- -CAGCCGC-CgUAcCGCUUCUUGUagCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 14539 | 0.7 | 0.449346 |
Target: 5'- cGUCGGCGGCGcGuCGAucGGcAUGUCGCg -3' miRNA: 3'- -CAGCCGCCGUaCcGCU--UCuUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 19206 | 0.7 | 0.459497 |
Target: 5'- --aGGCGGCGcGGUuacGAcGAGCGUCGUg -3' miRNA: 3'- cagCCGCCGUaCCG---CUuCUUGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 720 | 0.7 | 0.469768 |
Target: 5'- gGUCGGCGGuCAUGcGCGu---GCGcUCGCc -3' miRNA: 3'- -CAGCCGCC-GUAC-CGCuucuUGU-AGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 29762 | 0.7 | 0.469768 |
Target: 5'- -cCGGCGaGCugaucGCGAGGAucgccGCGUCGCg -3' miRNA: 3'- caGCCGC-CGuac--CGCUUCU-----UGUAGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 17155 | 0.69 | 0.490654 |
Target: 5'- gGUCGGCGaagaucGCGaGGCGuGGGAGCG-CGCg -3' miRNA: 3'- -CAGCCGC------CGUaCCGC-UUCUUGUaGCG- -5' |
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28142 | 3' | -54.3 | NC_005887.1 | + | 7476 | 0.69 | 0.501257 |
Target: 5'- -gCGGCGGCgggugcgaccGUGGCGAu---CGUCGUc -3' miRNA: 3'- caGCCGCCG----------UACCGCUucuuGUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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