miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 5933 0.67 0.611601
Target:  5'- uUCGGUGuGUcgGGCG-AGGugAUCGa -3'
miRNA:   3'- cAGCCGC-CGuaCCGCuUCUugUAGCg -5'
28142 3' -54.3 NC_005887.1 + 17155 0.69 0.490654
Target:  5'- gGUCGGCGaagaucGCGaGGCGuGGGAGCG-CGCg -3'
miRNA:   3'- -CAGCCGC------CGUaCCGC-UUCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 18549 0.69 0.5271
Target:  5'- gGUgGGCGGCGgcgccggcuucgcgGGCGAcauGcuCGUCGCg -3'
miRNA:   3'- -CAgCCGCCGUa-------------CCGCUu--CuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 29503 0.69 0.53364
Target:  5'- -cCGGCGGCcucgacGGCGGgcgcguuguAGAACAgcacgUCGCg -3'
miRNA:   3'- caGCCGCCGua----CCGCU---------UCUUGU-----AGCG- -5'
28142 3' -54.3 NC_005887.1 + 22147 0.68 0.544603
Target:  5'- cUCGGCuuCAUcGGCGAAGGGCugacgCGCa -3'
miRNA:   3'- cAGCCGccGUA-CCGCUUCUUGua---GCG- -5'
28142 3' -54.3 NC_005887.1 + 21262 0.68 0.55232
Target:  5'- cUCGGgGGCAccgcGGCGgcGGcguaugcgcugcugGCGUCGCc -3'
miRNA:   3'- cAGCCgCCGUa---CCGCuuCU--------------UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 17909 0.68 0.577891
Target:  5'- uUCGGCGGCGUcacaGGUuGGAcGGACG-CGCu -3'
miRNA:   3'- cAGCCGCCGUA----CCG-CUU-CUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 40788 0.68 0.577891
Target:  5'- -cCGGCGGUcgagguucGUGGCGgcGAcGCGcCGCu -3'
miRNA:   3'- caGCCGCCG--------UACCGCuuCU-UGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 30701 0.68 0.589093
Target:  5'- cUCGGCGaGCAggUGcGCGAGcAGCuuGUCGCg -3'
miRNA:   3'- cAGCCGC-CGU--AC-CGCUUcUUG--UAGCG- -5'
28142 3' -54.3 NC_005887.1 + 29762 0.7 0.469768
Target:  5'- -cCGGCGaGCugaucGCGAGGAucgccGCGUCGCg -3'
miRNA:   3'- caGCCGC-CGuac--CGCUUCU-----UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 19206 0.7 0.459497
Target:  5'- --aGGCGGCGcGGUuacGAcGAGCGUCGUg -3'
miRNA:   3'- cagCCGCCGUaCCG---CUuCUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 14539 0.7 0.449346
Target:  5'- cGUCGGCGGCGcGuCGAucGGcAUGUCGCg -3'
miRNA:   3'- -CAGCCGCCGUaCcGCU--UCuUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 15163 0.74 0.283165
Target:  5'- cUCGaCGGCAUGGCGAAGuACcUgGCg -3'
miRNA:   3'- cAGCcGCCGUACCGCUUCuUGuAgCG- -5'
28142 3' -54.3 NC_005887.1 + 18442 0.73 0.290569
Target:  5'- aUCGGCGcgaucucgacGCA-GGCGAAGAACcugcUCGCg -3'
miRNA:   3'- cAGCCGC----------CGUaCCGCUUCUUGu---AGCG- -5'
28142 3' -54.3 NC_005887.1 + 18948 0.73 0.305829
Target:  5'- cGUCGGCGGCcaauacgcacgAUucuGCGAAGGGCA-CGCg -3'
miRNA:   3'- -CAGCCGCCG-----------UAc--CGCUUCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 13410 0.72 0.338169
Target:  5'- cGUCGGCGGCAagccgcugcUGaCGAcGAGCggCGCa -3'
miRNA:   3'- -CAGCCGCCGU---------ACcGCUuCUUGuaGCG- -5'
28142 3' -54.3 NC_005887.1 + 3916 0.71 0.39119
Target:  5'- -aUGGCGaacgaCAUGGCGAAGAccaACAUcCGCg -3'
miRNA:   3'- caGCCGCc----GUACCGCUUCU---UGUA-GCG- -5'
28142 3' -54.3 NC_005887.1 + 4528 0.7 0.429423
Target:  5'- -aCGGCGGCGUcccggucgaGGCGAuGAGCAcCGa -3'
miRNA:   3'- caGCCGCCGUA---------CCGCUuCUUGUaGCg -5'
28142 3' -54.3 NC_005887.1 + 30957 0.7 0.429423
Target:  5'- uGUCGGCGcccGCGUacGUGAGGAACuUCGCc -3'
miRNA:   3'- -CAGCCGC---CGUAc-CGCUUCUUGuAGCG- -5'
28142 3' -54.3 NC_005887.1 + 5826 0.7 0.43932
Target:  5'- aGUCGGCGcGgGUcGCGAAGGGCGaaGCg -3'
miRNA:   3'- -CAGCCGC-CgUAcCGCUUCUUGUagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.