miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 21880 0.66 0.712573
Target:  5'- uUCGGCGcGCccGGCagcgccgcGGACGUCGUg -3'
miRNA:   3'- cAGCCGC-CGuaCCGcuu-----CUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 28594 0.68 0.589093
Target:  5'- -cCGGCGcGCGUGaGCGugccuGAccGCAUCGUc -3'
miRNA:   3'- caGCCGC-CGUAC-CGCuu---CU--UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 16201 0.68 0.544603
Target:  5'- -cCGGUGGU-UGGCG-GGGugGUUGCg -3'
miRNA:   3'- caGCCGCCGuACCGCuUCUugUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 19323 0.76 0.199604
Target:  5'- cGUCGGCGGCAccaaGCGGuacagguGGAGCAUCGa -3'
miRNA:   3'- -CAGCCGCCGUac--CGCU-------UCUUGUAGCg -5'
28142 3' -54.3 NC_005887.1 + 15033 0.66 0.679239
Target:  5'- -cUGcGCGGCGUaGGCGucGAguugcggcGCGUCGUa -3'
miRNA:   3'- caGC-CGCCGUA-CCGCuuCU--------UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 14085 0.66 0.668017
Target:  5'- -cCGGCGGCGcgccGGCGGuu-GCGgaggCGCg -3'
miRNA:   3'- caGCCGCCGUa---CCGCUucuUGUa---GCG- -5'
28142 3' -54.3 NC_005887.1 + 31298 0.66 0.668017
Target:  5'- -aCGGUGGCAUGuuCGAuc-GCGUCGUg -3'
miRNA:   3'- caGCCGCCGUACc-GCUucuUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 36033 0.67 0.65676
Target:  5'- --gGGCGaacGCggGGCGAAGGGCAcgaGCg -3'
miRNA:   3'- cagCCGC---CGuaCCGCUUCUUGUag-CG- -5'
28142 3' -54.3 NC_005887.1 + 12651 0.67 0.645479
Target:  5'- cGUC-GCGGCcgGGuCGgcGGACAccaugCGCa -3'
miRNA:   3'- -CAGcCGCCGuaCC-GCuuCUUGUa----GCG- -5'
28142 3' -54.3 NC_005887.1 + 28216 0.67 0.600333
Target:  5'- aGUCGGCGuGCGaGGUGuuGcAgGUCGCc -3'
miRNA:   3'- -CAGCCGC-CGUaCCGCuuCuUgUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 3036 0.67 0.622889
Target:  5'- -gCGaCGGaCGUggagucgccGGCGAGGAugGUCGCg -3'
miRNA:   3'- caGCcGCC-GUA---------CCGCUUCUugUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 28337 0.67 0.649993
Target:  5'- cUCGGCGuGCcgaugaugcucgucaGUGGUGAAGcGCcgcUCGCg -3'
miRNA:   3'- cAGCCGC-CG---------------UACCGCUUCuUGu--AGCG- -5'
28142 3' -54.3 NC_005887.1 + 36807 0.66 0.712573
Target:  5'- -cCGcGCGGCAUcGGCacGAuuAACAUCGUu -3'
miRNA:   3'- caGC-CGCCGUA-CCG--CUucUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 30472 0.67 0.611601
Target:  5'- gGUgGGCgaacucGGCGUGGCGAAGuuuucagaGGCGaCGCc -3'
miRNA:   3'- -CAgCCG------CCGUACCGCUUC--------UUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 14307 0.66 0.690413
Target:  5'- -cCGGCGGCAagaucggaUGccGCGccGAACAgCGCg -3'
miRNA:   3'- caGCCGCCGU--------AC--CGCuuCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 23501 0.67 0.65676
Target:  5'- -gCGGCGGgAUGGCGGGcGGC--UGCg -3'
miRNA:   3'- caGCCGCCgUACCGCUUcUUGuaGCG- -5'
28142 3' -54.3 NC_005887.1 + 2839 0.67 0.611601
Target:  5'- --gGuGUGGCGUGGCGcAGGAUAgUGCg -3'
miRNA:   3'- cagC-CGCCGUACCGCuUCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 41622 0.68 0.589093
Target:  5'- cUCGGCGcuggcugacuucGCGUGcGCGccGAGCGccUCGCg -3'
miRNA:   3'- cAGCCGC------------CGUAC-CGCuuCUUGU--AGCG- -5'
28142 3' -54.3 NC_005887.1 + 5623 0.66 0.689298
Target:  5'- cGUCGGCGauagauuGCAgccacgugGGCGcAGAAUcgUGCg -3'
miRNA:   3'- -CAGCCGC-------CGUa-------CCGCuUCUUGuaGCG- -5'
28142 3' -54.3 NC_005887.1 + 880 0.66 0.668017
Target:  5'- aUCGcGCGaGCAUGGCuGuuGAucGCgAUCGCg -3'
miRNA:   3'- cAGC-CGC-CGUACCG-CuuCU--UG-UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.