miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 720 0.7 0.469768
Target:  5'- gGUCGGCGGuCAUGcGCGu---GCGcUCGCc -3'
miRNA:   3'- -CAGCCGCC-GUAC-CGCuucuUGU-AGCG- -5'
28142 3' -54.3 NC_005887.1 + 880 0.66 0.668017
Target:  5'- aUCGcGCGaGCAUGGCuGuuGAucGCgAUCGCg -3'
miRNA:   3'- cAGC-CGC-CGUACCG-CuuCU--UG-UAGCG- -5'
28142 3' -54.3 NC_005887.1 + 896 0.66 0.679239
Target:  5'- aGUCaGGCGGCcucGGCuucGAuccGCGUCGCg -3'
miRNA:   3'- -CAG-CCGCCGua-CCGcuuCU---UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 1954 0.66 0.701528
Target:  5'- aUCGGUGGguCGUgaacccGGCGGccgAGAACAUCGa -3'
miRNA:   3'- cAGCCGCC--GUA------CCGCU---UCUUGUAGCg -5'
28142 3' -54.3 NC_005887.1 + 2219 0.67 0.611601
Target:  5'- aUgGGCGGC-UGGCGcauccggucGGAAguCGUCGCg -3'
miRNA:   3'- cAgCCGCCGuACCGCu--------UCUU--GUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 2839 0.67 0.611601
Target:  5'- --gGuGUGGCGUGGCGcAGGAUAgUGCg -3'
miRNA:   3'- cagC-CGCCGUACCGCuUCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 3036 0.67 0.622889
Target:  5'- -gCGaCGGaCGUggagucgccGGCGAGGAugGUCGCg -3'
miRNA:   3'- caGCcGCC-GUA---------CCGCUUCUugUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 3771 0.73 0.321695
Target:  5'- gGUCGGCGcGCGgcucgacGGCGugguAGAAgAUCGCc -3'
miRNA:   3'- -CAGCCGC-CGUa------CCGCu---UCUUgUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 3916 0.71 0.39119
Target:  5'- -aUGGCGaacgaCAUGGCGAAGAccaACAUcCGCg -3'
miRNA:   3'- caGCCGCc----GUACCGCUUCU---UGUA-GCG- -5'
28142 3' -54.3 NC_005887.1 + 4528 0.7 0.429423
Target:  5'- -aCGGCGGCGUcccggucgaGGCGAuGAGCAcCGa -3'
miRNA:   3'- caGCCGCCGUA---------CCGCUuCUUGUaGCg -5'
28142 3' -54.3 NC_005887.1 + 5372 0.71 0.39119
Target:  5'- cGUCGG-GGUGuUGGCGuAGAACuUCGCc -3'
miRNA:   3'- -CAGCCgCCGU-ACCGCuUCUUGuAGCG- -5'
28142 3' -54.3 NC_005887.1 + 5623 0.66 0.689298
Target:  5'- cGUCGGCGauagauuGCAgccacgugGGCGcAGAAUcgUGCg -3'
miRNA:   3'- -CAGCCGC-------CGUa-------CCGCuUCUUGuaGCG- -5'
28142 3' -54.3 NC_005887.1 + 5826 0.7 0.43932
Target:  5'- aGUCGGCGcGgGUcGCGAAGGGCGaaGCg -3'
miRNA:   3'- -CAGCCGC-CgUAcCGCUUCUUGUagCG- -5'
28142 3' -54.3 NC_005887.1 + 5872 0.66 0.668017
Target:  5'- --aGGCGaGUggGGCGAcagcuacgaccGGAACGUCGa -3'
miRNA:   3'- cagCCGC-CGuaCCGCU-----------UCUUGUAGCg -5'
28142 3' -54.3 NC_005887.1 + 5933 0.67 0.611601
Target:  5'- uUCGGUGuGUcgGGCG-AGGugAUCGa -3'
miRNA:   3'- cAGCCGC-CGuaCCGCuUCUugUAGCg -5'
28142 3' -54.3 NC_005887.1 + 6590 0.69 0.538016
Target:  5'- uUCGGCGGg--GGCGAugccgucauugccguAGAACAgcgucugCGCa -3'
miRNA:   3'- cAGCCGCCguaCCGCU---------------UCUUGUa------GCG- -5'
28142 3' -54.3 NC_005887.1 + 7376 0.67 0.637574
Target:  5'- uGUCGGCGGCGacggacGGCGAcacgacgacccacAGcgggcggccggggccGAUGUCGCg -3'
miRNA:   3'- -CAGCCGCCGUa-----CCGCU-------------UC---------------UUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 7476 0.69 0.501257
Target:  5'- -gCGGCGGCgggugcgaccGUGGCGAu---CGUCGUc -3'
miRNA:   3'- caGCCGCCG----------UACCGCUucuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 7565 0.67 0.611601
Target:  5'- -cCGGCcucguGGCA-GGCGuauccGGAcgGCAUCGCg -3'
miRNA:   3'- caGCCG-----CCGUaCCGCu----UCU--UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 8167 0.69 0.511961
Target:  5'- cUCGGCGaGCGcGGCGAGcuGCG-CGCg -3'
miRNA:   3'- cAGCCGC-CGUaCCGCUUcuUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.