miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 41622 0.68 0.589093
Target:  5'- cUCGGCGcuggcugacuucGCGUGcGCGccGAGCGccUCGCg -3'
miRNA:   3'- cAGCCGC------------CGUAC-CGCuuCUUGU--AGCG- -5'
28142 3' -54.3 NC_005887.1 + 41050 0.67 0.622889
Target:  5'- gGUCGaGCucgagaaCAUGGCGAAGGACAcgauccgCGCg -3'
miRNA:   3'- -CAGC-CGcc-----GUACCGCUUCUUGUa------GCG- -5'
28142 3' -54.3 NC_005887.1 + 40788 0.68 0.577891
Target:  5'- -cCGGCGGUcgagguucGUGGCGgcGAcGCGcCGCu -3'
miRNA:   3'- caGCCGCCG--------UACCGCuuCU-UGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 39028 0.67 0.622889
Target:  5'- -aCGGCGGCuUGcuGCGGAGucagcgaacGACAUgGCg -3'
miRNA:   3'- caGCCGCCGuAC--CGCUUC---------UUGUAgCG- -5'
28142 3' -54.3 NC_005887.1 + 38216 0.66 0.679239
Target:  5'- aGUCGcGCGcagccuugcGCGUGGCcGGGAugGUCGa -3'
miRNA:   3'- -CAGC-CGC---------CGUACCGcUUCUugUAGCg -5'
28142 3' -54.3 NC_005887.1 + 36807 0.66 0.712573
Target:  5'- -cCGcGCGGCAUcGGCacGAuuAACAUCGUu -3'
miRNA:   3'- caGC-CGCCGUA-CCG--CUucUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 36033 0.67 0.65676
Target:  5'- --gGGCGaacGCggGGCGAAGGGCAcgaGCg -3'
miRNA:   3'- cagCCGC---CGuaCCGCUUCUUGUag-CG- -5'
28142 3' -54.3 NC_005887.1 + 35830 0.66 0.690413
Target:  5'- cUCGuGCGccGCGUcGGCGuAGAuCAUCGCc -3'
miRNA:   3'- cAGC-CGC--CGUA-CCGCuUCUuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 34688 0.66 0.701528
Target:  5'- uGUCGaGCaGCAgcgGGCGGccguCGUCGCg -3'
miRNA:   3'- -CAGC-CGcCGUa--CCGCUucuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 33716 0.66 0.675876
Target:  5'- -gCGGCGGUcgaucugcucgaucGcGGCGAGGAuCAgCGCg -3'
miRNA:   3'- caGCCGCCG--------------UaCCGCUUCUuGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 33386 0.66 0.690413
Target:  5'- -cCGGCgcGGCA-GGaUGAGGcuCAUCGCg -3'
miRNA:   3'- caGCCG--CCGUaCC-GCUUCuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 31298 0.66 0.668017
Target:  5'- -aCGGUGGCAUGuuCGAuc-GCGUCGUg -3'
miRNA:   3'- caGCCGCCGUACc-GCUucuUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 30957 0.7 0.429423
Target:  5'- uGUCGGCGcccGCGUacGUGAGGAACuUCGCc -3'
miRNA:   3'- -CAGCCGC---CGUAc-CGCUUCUUGuAGCG- -5'
28142 3' -54.3 NC_005887.1 + 30701 0.68 0.589093
Target:  5'- cUCGGCGaGCAggUGcGCGAGcAGCuuGUCGCg -3'
miRNA:   3'- cAGCCGC-CGU--AC-CGCUUcUUG--UAGCG- -5'
28142 3' -54.3 NC_005887.1 + 30472 0.67 0.611601
Target:  5'- gGUgGGCgaacucGGCGUGGCGAAGuuuucagaGGCGaCGCc -3'
miRNA:   3'- -CAgCCG------CCGUACCGCUUC--------UUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 29832 0.67 0.645479
Target:  5'- -gCGGCGcCAgaGGCGuuuGAGGAUGUCGCa -3'
miRNA:   3'- caGCCGCcGUa-CCGC---UUCUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 29762 0.7 0.469768
Target:  5'- -cCGGCGaGCugaucGCGAGGAucgccGCGUCGCg -3'
miRNA:   3'- caGCCGC-CGuac--CGCUUCU-----UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 29503 0.69 0.53364
Target:  5'- -cCGGCGGCcucgacGGCGGgcgcguuguAGAACAgcacgUCGCg -3'
miRNA:   3'- caGCCGCCGua----CCGCU---------UCUUGU-----AGCG- -5'
28142 3' -54.3 NC_005887.1 + 28594 0.68 0.589093
Target:  5'- -cCGGCGcGCGUGaGCGugccuGAccGCAUCGUc -3'
miRNA:   3'- caGCCGC-CGUAC-CGCuu---CU--UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 28337 0.67 0.649993
Target:  5'- cUCGGCGuGCcgaugaugcucgucaGUGGUGAAGcGCcgcUCGCg -3'
miRNA:   3'- cAGCCGC-CG---------------UACCGCUUCuUGu--AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.