miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28142 3' -54.3 NC_005887.1 + 11019 0.67 0.65676
Target:  5'- -gCGGCGGUcUGGUcgaguguugGGAGAACcgggCGCa -3'
miRNA:   3'- caGCCGCCGuACCG---------CUUCUUGua--GCG- -5'
28142 3' -54.3 NC_005887.1 + 11604 0.67 0.65676
Target:  5'- aUCGGCGcucgacacGCA-GGUGcAGAGCGUgCGCa -3'
miRNA:   3'- cAGCCGC--------CGUaCCGCuUCUUGUA-GCG- -5'
28142 3' -54.3 NC_005887.1 + 11778 0.67 0.653377
Target:  5'- cUCGGCGGCGUccucgcugcucggcGGCGucGGuuCGUaCGCu -3'
miRNA:   3'- cAGCCGCCGUA--------------CCGCuuCUu-GUA-GCG- -5'
28142 3' -54.3 NC_005887.1 + 12651 0.67 0.645479
Target:  5'- cGUC-GCGGCcgGGuCGgcGGACAccaugCGCa -3'
miRNA:   3'- -CAGcCGCCGuaCC-GCuuCUUGUa----GCG- -5'
28142 3' -54.3 NC_005887.1 + 13410 0.72 0.338169
Target:  5'- cGUCGGCGGCAagccgcugcUGaCGAcGAGCggCGCa -3'
miRNA:   3'- -CAGCCGCCGU---------ACcGCUuCUUGuaGCG- -5'
28142 3' -54.3 NC_005887.1 + 13626 0.71 0.381985
Target:  5'- cGUCGGCcuGCucgGGCGGcAGcGCAUCGCc -3'
miRNA:   3'- -CAGCCGc-CGua-CCGCU-UCuUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 14085 0.66 0.668017
Target:  5'- -cCGGCGGCGcgccGGCGGuu-GCGgaggCGCg -3'
miRNA:   3'- caGCCGCCGUa---CCGCUucuUGUa---GCG- -5'
28142 3' -54.3 NC_005887.1 + 14307 0.66 0.690413
Target:  5'- -cCGGCGGCAagaucggaUGccGCGccGAACAgCGCg -3'
miRNA:   3'- caGCCGCCGU--------AC--CGCuuCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 14539 0.7 0.449346
Target:  5'- cGUCGGCGGCGcGuCGAucGGcAUGUCGCg -3'
miRNA:   3'- -CAGCCGCCGUaCcGCU--UCuUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 15033 0.66 0.679239
Target:  5'- -cUGcGCGGCGUaGGCGucGAguugcggcGCGUCGUa -3'
miRNA:   3'- caGC-CGCCGUA-CCGCuuCU--------UGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 15163 0.74 0.283165
Target:  5'- cUCGaCGGCAUGGCGAAGuACcUgGCg -3'
miRNA:   3'- cAGCcGCCGUACCGCUUCuUGuAgCG- -5'
28142 3' -54.3 NC_005887.1 + 15206 0.67 0.622889
Target:  5'- -aCGGCGGCAaccuGCaGgcGAugAUCGCc -3'
miRNA:   3'- caGCCGCCGUac--CG-CuuCUugUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 16201 0.68 0.544603
Target:  5'- -cCGGUGGU-UGGCG-GGGugGUUGCg -3'
miRNA:   3'- caGCCGCCGuACCGCuUCUugUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 16578 0.7 0.429423
Target:  5'- -cCGGCGGCGacGCGAucGGccugcGACAUCGCc -3'
miRNA:   3'- caGCCGCCGUacCGCU--UC-----UUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 17155 0.69 0.490654
Target:  5'- gGUCGGCGaagaucGCGaGGCGuGGGAGCG-CGCg -3'
miRNA:   3'- -CAGCCGC------CGUaCCGC-UUCUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 17413 1.13 0.00048
Target:  5'- cGUCGGCGGCAUGGCGAAGAACAUCGCg -3'
miRNA:   3'- -CAGCCGCCGUACCGCUUCUUGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 17909 0.68 0.577891
Target:  5'- uUCGGCGGCGUcacaGGUuGGAcGGACG-CGCu -3'
miRNA:   3'- cAGCCGCCGUA----CCG-CUU-CUUGUaGCG- -5'
28142 3' -54.3 NC_005887.1 + 18442 0.73 0.290569
Target:  5'- aUCGGCGcgaucucgacGCA-GGCGAAGAACcugcUCGCg -3'
miRNA:   3'- cAGCCGC----------CGUaCCGCUUCUUGu---AGCG- -5'
28142 3' -54.3 NC_005887.1 + 18549 0.69 0.5271
Target:  5'- gGUgGGCGGCGgcgccggcuucgcgGGCGAcauGcuCGUCGCg -3'
miRNA:   3'- -CAgCCGCCGUa-------------CCGCUu--CuuGUAGCG- -5'
28142 3' -54.3 NC_005887.1 + 18948 0.73 0.305829
Target:  5'- cGUCGGCGGCcaauacgcacgAUucuGCGAAGGGCA-CGCg -3'
miRNA:   3'- -CAGCCGCCG-----------UAc--CGCUUCUUGUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.