miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 41700 0.68 0.320721
Target:  5'- uGCGCGagGGGCucaucaaggcgaUGACGGgCGGCGAUc -3'
miRNA:   3'- -CGCGCggCCUG------------ACUGCCgGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 41084 0.69 0.279488
Target:  5'- cGCGCGCUcguggacgaggcagaGGaACUgcaGACGGCCGAgGAa- -3'
miRNA:   3'- -CGCGCGG---------------CC-UGA---CUGCCGGCUgCUaa -5'
28143 3' -59.8 NC_005887.1 + 40767 0.69 0.26315
Target:  5'- gGCGCGCCGcGCgccGcCGaGCCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCcUGa--CuGC-CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 40739 0.69 0.269184
Target:  5'- cGCGCGCCaggugcaGGAUgguGCGGCCGGUGAUc -3'
miRNA:   3'- -CGCGCGG-------CCUGac-UGCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 40695 0.69 0.27671
Target:  5'- cGCGCGCaCGG-CUGGCaggaGCCGAuCGAa- -3'
miRNA:   3'- -CGCGCG-GCCuGACUGc---CGGCU-GCUaa -5'
28143 3' -59.8 NC_005887.1 + 39482 0.66 0.405204
Target:  5'- cGCGUGuuGccGCUGGCcaGGCUGACGAa- -3'
miRNA:   3'- -CGCGCggCc-UGACUG--CCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 37472 0.69 0.250135
Target:  5'- aGUGCGCCGGAUgcGAUcaGGgCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCCUGa-CUG--CCgGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 36221 0.67 0.336513
Target:  5'- aCGCGCCGcGACgagGAaacCGGCgaGACGAUc -3'
miRNA:   3'- cGCGCGGC-CUGa--CU---GCCGg-CUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 35333 0.72 0.164303
Target:  5'- cGCGCGCCGcGGCgGcCGGCC-ACGAg- -3'
miRNA:   3'- -CGCGCGGC-CUGaCuGCCGGcUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 35144 0.7 0.243829
Target:  5'- -gGCGCCacGGACgGGCGGCCGucacgcugcACGAUc -3'
miRNA:   3'- cgCGCGG--CCUGaCUGCCGGC---------UGCUAa -5'
28143 3' -59.8 NC_005887.1 + 34036 0.7 0.231614
Target:  5'- -gGCGCCGGuGCUGACGgacGCCGcacGCGAc- -3'
miRNA:   3'- cgCGCGGCC-UGACUGC---CGGC---UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 33883 0.67 0.352864
Target:  5'- cCGCGCCGacCUGACacccgcgugguGGCCGugGGUc -3'
miRNA:   3'- cGCGCGGCcuGACUG-----------CCGGCugCUAa -5'
28143 3' -59.8 NC_005887.1 + 33342 0.72 0.173377
Target:  5'- aGUGCGCCGG-CUG-CGGCgGgACGAa- -3'
miRNA:   3'- -CGCGCGGCCuGACuGCCGgC-UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 32362 0.76 0.089488
Target:  5'- gGCGCGCCGG-CUGGC--CCGACGAUc -3'
miRNA:   3'- -CGCGCGGCCuGACUGccGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 31362 0.68 0.301031
Target:  5'- gGUGCGCCGaugccggucgagcucGACgagGcgaucgacGCGGCCGACGAg- -3'
miRNA:   3'- -CGCGCGGC---------------CUGa--C--------UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 30823 0.67 0.378427
Target:  5'- cGCGCGCaCGGucgaGCUGACcGaCGGCGAa- -3'
miRNA:   3'- -CGCGCG-GCC----UGACUGcCgGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 30488 0.68 0.313036
Target:  5'- cCGaCGUCGGcCUGAUGGUgGGCGAa- -3'
miRNA:   3'- cGC-GCGGCCuGACUGCCGgCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 30272 0.67 0.369769
Target:  5'- cCGCGaCGcGGCgUGGCuGGCCGGCGAg- -3'
miRNA:   3'- cGCGCgGC-CUG-ACUG-CCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 29501 0.69 0.26315
Target:  5'- aGCGCcugacGCCGacGACUacuCGGCCGACGAg- -3'
miRNA:   3'- -CGCG-----CGGC--CUGAcu-GCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 28736 0.67 0.3562
Target:  5'- cGCGCGCUaucgccguuguagguGaGACgcgGcauuACGGCCGGCGAUUu -3'
miRNA:   3'- -CGCGCGG---------------C-CUGa--C----UGCCGGCUGCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.