miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 18379 0.68 0.328547
Target:  5'- gGCGCGCCGGcGCUcgcgaacccGAUGGCCuACGc-- -3'
miRNA:   3'- -CGCGCGGCC-UGA---------CUGCCGGcUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 37472 0.69 0.250135
Target:  5'- aGUGCGCCGGAUgcGAUcaGGgCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCCUGa-CUG--CCgGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 5160 0.69 0.26315
Target:  5'- gGCGCGCCGcugauGCUGAUGGCaCGcguCGAg- -3'
miRNA:   3'- -CGCGCGGCc----UGACUGCCG-GCu--GCUaa -5'
28143 3' -59.8 NC_005887.1 + 40767 0.69 0.26315
Target:  5'- gGCGCGCCGcGCgccGcCGaGCCGGCGGUc -3'
miRNA:   3'- -CGCGCGGCcUGa--CuGC-CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 28544 0.69 0.267833
Target:  5'- cGCGCGCCGGGCUGcugaauuuguagGCGucGCCGcccgcugcgcggacGCGGUc -3'
miRNA:   3'- -CGCGCGGCCUGAC------------UGC--CGGC--------------UGCUAa -5'
28143 3' -59.8 NC_005887.1 + 14711 0.69 0.27671
Target:  5'- gGCGgGCCGGGC--GCGGCgaucgcgcaggCGACGAUc -3'
miRNA:   3'- -CGCgCGGCCUGacUGCCG-----------GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 40695 0.69 0.27671
Target:  5'- cGCGCGCaCGG-CUGGCaggaGCCGAuCGAa- -3'
miRNA:   3'- -CGCGCG-GCCuGACUGc---CGGCU-GCUaa -5'
28143 3' -59.8 NC_005887.1 + 41084 0.69 0.279488
Target:  5'- cGCGCGCUcguggacgaggcagaGGaACUgcaGACGGCCGAgGAa- -3'
miRNA:   3'- -CGCGCGG---------------CC-UGA---CUGCCGGCUgCUaa -5'
28143 3' -59.8 NC_005887.1 + 41700 0.68 0.320721
Target:  5'- uGCGCGagGGGCucaucaaggcgaUGACGGgCGGCGAUc -3'
miRNA:   3'- -CGCGCggCCUG------------ACUGCCgGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10224 0.7 0.243829
Target:  5'- cCGCGCCGGAC-GGCGcGuCUGAUGAc- -3'
miRNA:   3'- cGCGCGGCCUGaCUGC-C-GGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 35144 0.7 0.243829
Target:  5'- -gGCGCCacGGACgGGCGGCCGucacgcugcACGAUc -3'
miRNA:   3'- cgCGCGG--CCUGaCUGCCGGC---------UGCUAa -5'
28143 3' -59.8 NC_005887.1 + 12221 0.7 0.231017
Target:  5'- gGCGCGCCGGAuuucacgccaaacCUGAUcaagGGCuuCGACGAc- -3'
miRNA:   3'- -CGCGCGGCCU-------------GACUG----CCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 11386 0.82 0.02837
Target:  5'- aGCGCaGCCGGagcGCUGGCGGCCGGCGc-- -3'
miRNA:   3'- -CGCG-CGGCC---UGACUGCCGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 8347 0.75 0.108874
Target:  5'- cGCGUGCCGu-CUGGCGGCCGaagccuGCGAa- -3'
miRNA:   3'- -CGCGCGGCcuGACUGCCGGC------UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 35333 0.72 0.164303
Target:  5'- cGCGCGCCGcGGCgGcCGGCC-ACGAg- -3'
miRNA:   3'- -CGCGCGGC-CUGaCuGCCGGcUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 11224 0.72 0.164303
Target:  5'- cGUGCGCCGGAaauauACGGUCGAUGGc- -3'
miRNA:   3'- -CGCGCGGCCUgac--UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 13399 0.72 0.172912
Target:  5'- gGCGCGgCGGACgucGGCGGCaagccgcugcugaCGACGAg- -3'
miRNA:   3'- -CGCGCgGCCUGa--CUGCCG-------------GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 4773 0.71 0.192872
Target:  5'- -aGCGCgGGaaGCUGACGccaGCCGGCGAg- -3'
miRNA:   3'- cgCGCGgCC--UGACUGC---CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 4405 0.7 0.214262
Target:  5'- uGCGCGCCGG-C-GAaGGCgCGGCGAUc -3'
miRNA:   3'- -CGCGCGGCCuGaCUgCCG-GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 882 0.7 0.219918
Target:  5'- cGCGcCGCCGGACgagucaGGCGGCCu-CGGc- -3'
miRNA:   3'- -CGC-GCGGCCUGa-----CUGCCGGcuGCUaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.