miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 5574 0.66 0.414392
Target:  5'- uGCG-GCCGGuGCUG-CGGCCGgugcuGCGGc- -3'
miRNA:   3'- -CGCgCGGCC-UGACuGCCGGC-----UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 40739 0.69 0.269184
Target:  5'- cGCGCGCCaggugcaGGAUgguGCGGCCGGUGAUc -3'
miRNA:   3'- -CGCGCGG-------CCUGac-UGCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 34036 0.7 0.231614
Target:  5'- -gGCGCCGGuGCUGACGgacGCCGcacGCGAc- -3'
miRNA:   3'- cgCGCGGCC-UGACUGC---CGGC---UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 32362 0.76 0.089488
Target:  5'- gGCGCGCCGG-CUGGC--CCGACGAUc -3'
miRNA:   3'- -CGCGCGGCCuGACUGccGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 8520 0.67 0.378427
Target:  5'- uUGCGCCGGGCgcucgaucgcguUGACGcggaucGCuCGGCGAUa -3'
miRNA:   3'- cGCGCGGCCUG------------ACUGC------CG-GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 30823 0.67 0.378427
Target:  5'- cGCGCGCaCGGucgaGCUGACcGaCGGCGAa- -3'
miRNA:   3'- -CGCGCG-GCC----UGACUGcCgGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 26141 0.67 0.361247
Target:  5'- cCGCGCgGGccGCUGACGcGCUGACc--- -3'
miRNA:   3'- cGCGCGgCC--UGACUGC-CGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 26791 0.67 0.361247
Target:  5'- cGUGCGcCCGGucuaugucgaGCUGcccGCGGCCGcGCGAc- -3'
miRNA:   3'- -CGCGC-GGCC----------UGAC---UGCCGGC-UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 36221 0.67 0.336513
Target:  5'- aCGCGCCGcGACgagGAaacCGGCgaGACGAUc -3'
miRNA:   3'- cGCGCGGC-CUGa--CU---GCCGg-CUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10998 0.69 0.269861
Target:  5'- uGCGCGUaauCGGGCgUGAgcaggcCGGCCGACGu-- -3'
miRNA:   3'- -CGCGCG---GCCUG-ACU------GCCGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 30488 0.68 0.313036
Target:  5'- cCGaCGUCGGcCUGAUGGUgGGCGAa- -3'
miRNA:   3'- cGC-GCGGCCuGACUGCCGgCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 21877 0.67 0.344618
Target:  5'- gGCGCGcCCGGcaGCgccgcgGACGucguguugauGCCGGCGAUg -3'
miRNA:   3'- -CGCGC-GGCC--UGa-----CUGC----------CGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 23502 0.66 0.414392
Target:  5'- aGCG-GCgGGAUggcgGGCGGCugCGACGAg- -3'
miRNA:   3'- -CGCgCGgCCUGa---CUGCCG--GCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 10337 0.68 0.302512
Target:  5'- -aGCGCaCGGucugcccguugacCUGGCGGCgGACGAUc -3'
miRNA:   3'- cgCGCG-GCCu------------GACUGCCGgCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10081 0.66 0.396146
Target:  5'- aGCGCgGCCGcGCgUGAugUGGUCGGCGAUc -3'
miRNA:   3'- -CGCG-CGGCcUG-ACU--GCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 33883 0.67 0.352864
Target:  5'- cCGCGCCGacCUGACacccgcgugguGGCCGugGGUc -3'
miRNA:   3'- cGCGCGGCcuGACUG-----------CCGGCugCUAa -5'
28143 3' -59.8 NC_005887.1 + 31362 0.68 0.301031
Target:  5'- gGUGCGCCGaugccggucgagcucGACgagGcgaucgacGCGGCCGACGAg- -3'
miRNA:   3'- -CGCGCGGC---------------CUGa--C--------UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 29501 0.69 0.26315
Target:  5'- aGCGCcugacGCCGacGACUacuCGGCCGACGAg- -3'
miRNA:   3'- -CGCG-----CGGC--CUGAcu-GCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 28399 0.66 0.38722
Target:  5'- cCGCGCCGGcGCaGACG-CCGACa--- -3'
miRNA:   3'- cGCGCGGCC-UGaCUGCcGGCUGcuaa -5'
28143 3' -59.8 NC_005887.1 + 30272 0.67 0.369769
Target:  5'- cCGCGaCGcGGCgUGGCuGGCCGGCGAg- -3'
miRNA:   3'- cGCGCgGC-CUG-ACUG-CCGGCUGCUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.