miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28143 3' -59.8 NC_005887.1 + 599 0.71 0.20873
Target:  5'- gGCGCGgCGcGC-GGCGGCCGACGcgUu -3'
miRNA:   3'- -CGCGCgGCcUGaCUGCCGGCUGCuaA- -5'
28143 3' -59.8 NC_005887.1 + 882 0.7 0.219918
Target:  5'- cGCGcCGCCGGACgagucaGGCGGCCu-CGGc- -3'
miRNA:   3'- -CGC-GCGGCCUGa-----CUGCCGGcuGCUaa -5'
28143 3' -59.8 NC_005887.1 + 1789 0.66 0.423706
Target:  5'- uGCGCGUCGGccGCUacccgaagGACGuGCCGcCGAc- -3'
miRNA:   3'- -CGCGCGGCC--UGA--------CUGC-CGGCuGCUaa -5'
28143 3' -59.8 NC_005887.1 + 2403 0.66 0.405204
Target:  5'- uGCGUGCCGcuGGCUucgaGGCGaagcccgcGCCGACGAa- -3'
miRNA:   3'- -CGCGCGGC--CUGA----CUGC--------CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 4114 0.66 0.433145
Target:  5'- uCGCGCaGGACacGCGGCaGACGAUc -3'
miRNA:   3'- cGCGCGgCCUGacUGCCGgCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 4405 0.7 0.214262
Target:  5'- uGCGCGCCGG-C-GAaGGCgCGGCGAUc -3'
miRNA:   3'- -CGCGCGGCCuGaCUgCCG-GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 4773 0.71 0.192872
Target:  5'- -aGCGCgGGaaGCUGACGccaGCCGGCGAg- -3'
miRNA:   3'- cgCGCGgCC--UGACUGC---CGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 5160 0.69 0.26315
Target:  5'- gGCGCGCCGcugauGCUGAUGGCaCGcguCGAg- -3'
miRNA:   3'- -CGCGCGGCc----UGACUGCCG-GCu--GCUaa -5'
28143 3' -59.8 NC_005887.1 + 5396 0.66 0.405204
Target:  5'- aGCGCGaCCGGugaACcGGCGGgCGGCGc-- -3'
miRNA:   3'- -CGCGC-GGCC---UGaCUGCCgGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 5574 0.66 0.414392
Target:  5'- uGCG-GCCGGuGCUG-CGGCCGgugcuGCGGc- -3'
miRNA:   3'- -CGCgCGGCC-UGACuGCCGGC-----UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 7603 0.66 0.38722
Target:  5'- aGCgGCGCCGGuugaucGAUGGgCGGCGAc- -3'
miRNA:   3'- -CG-CGCGGCCuga---CUGCCgGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 8347 0.75 0.108874
Target:  5'- cGCGUGCCGu-CUGGCGGCCGaagccuGCGAa- -3'
miRNA:   3'- -CGCGCGGCcuGACUGCCGGC------UGCUaa -5'
28143 3' -59.8 NC_005887.1 + 8520 0.67 0.378427
Target:  5'- uUGCGCCGGGCgcucgaucgcguUGACGcggaucGCuCGGCGAUa -3'
miRNA:   3'- cGCGCGGCCUG------------ACUGC------CG-GCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10081 0.66 0.396146
Target:  5'- aGCGCgGCCGcGCgUGAugUGGUCGGCGAUc -3'
miRNA:   3'- -CGCG-CGGCcUG-ACU--GCCGGCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10224 0.7 0.243829
Target:  5'- cCGCGCCGGAC-GGCGcGuCUGAUGAc- -3'
miRNA:   3'- cGCGCGGCCUGaCUGC-C-GGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 10337 0.68 0.302512
Target:  5'- -aGCGCaCGGucugcccguugacCUGGCGGCgGACGAUc -3'
miRNA:   3'- cgCGCG-GCCu------------GACUGCCGgCUGCUAa -5'
28143 3' -59.8 NC_005887.1 + 10998 0.69 0.269861
Target:  5'- uGCGCGUaauCGGGCgUGAgcaggcCGGCCGACGu-- -3'
miRNA:   3'- -CGCGCG---GCCUG-ACU------GCCGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 11224 0.72 0.164303
Target:  5'- cGUGCGCCGGAaauauACGGUCGAUGGc- -3'
miRNA:   3'- -CGCGCGGCCUgac--UGCCGGCUGCUaa -5'
28143 3' -59.8 NC_005887.1 + 11386 0.82 0.02837
Target:  5'- aGCGCaGCCGGagcGCUGGCGGCCGGCGc-- -3'
miRNA:   3'- -CGCG-CGGCC---UGACUGCCGGCUGCuaa -5'
28143 3' -59.8 NC_005887.1 + 12069 0.68 0.313036
Target:  5'- cGUGCGCCGGAUgucugcaacGugGGCgCGACc--- -3'
miRNA:   3'- -CGCGCGGCCUGa--------CugCCG-GCUGcuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.